Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penicillium_20sclerotiorum_20[genbank_20GCA_5F001750025.1_202016-09-
29] 228 sequences; 34,025,097 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 141 2e-28
seq10 123 6e-23
seq12 104 6e-17
>seq1
Length=4666273
Score = 141 bits (156), Expect = 2e-28
Identities = 152/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| ||||| || || ||||| |||||||| ||| ||
Sbjct 4323405 CAGATCTTCGTCAAGACCCTCACTGGAAAGACTATTACCCTGGAGGTGGAGTCCTCTGAT 4323464
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| || ||||| || || ||||| |||||||||||
Sbjct 4323465 ACTATCGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGTATCCCCCCGGACCAGCAG 4323524
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| || || || | ||||| |||| || ||| ||
Sbjct 4323525 CGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACTCTCTCCGACTACAACATC 4323584
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || ||||| || || |||
Sbjct 4323585 CAGAAGGAATCTACTCTTCAT 4323605
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||| || || || || ||||| | || || || || ||
Sbjct 4323760 CAAATCTTCGTCAAGACTCTTACTGGCAAGACTATCACTTTGGAAGTCGAGTCTTCCGAT 4323819
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || |||||||||||||||||
Sbjct 4323820 ACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAGCAG 4323879
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| ||||| ||| | || ||||| | ||||| | ||||| ||| ||
Sbjct 4323880 CGTCTGATCTTCGCTGGAAAGCAGTTGGAGGATGGTCGCACTCTCTCGGATTACAACATC 4323939
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 4323940 CAGAAGGAGTCCACCCTTCACCTGGT 4323965
Score = 132 bits (146), Expect = 1e-25
Identities = 150/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| || ||||| || || |||
Sbjct 4323177 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTTGAGTCTTCCGAC 4323236
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || || ||||| |||||||||||
Sbjct 4323237 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 4323296
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| || || || | ||||| |||| || ||| ||
Sbjct 4323297 CGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGTCGCACTCTCTCCGACTACAACATC 4323356
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || ||||| || || |||
Sbjct 4323357 CAGAAGGAATCTACTCTTCAT 4323377
Score = 125 bits (138), Expect = 2e-23
Identities = 139/184 (76%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||| | ||||| || ||| ||||||||||| || |||||
Sbjct 4322970 ACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCTGACACCATCGACAATGTCAAGTCT 4323029
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || ||||||||||||||||| || || ||||||||||| ||
Sbjct 4323030 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAG 4323089
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || || | || || ||| |||| || || || || || ||
Sbjct 4323090 CAGCTGGAGGATGGCCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCCACTCTCCA- 4323148
Query 178125 CTTG 178128
||||
Sbjct 4323149 CTTG 4323152
Score = 93.3 bits (102), Expect = 1e-13
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || || ||||| ||||||||||| || || |||||||| || || ||||||||
Sbjct 3064529 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAG 3064470
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||| | |||||| | || || ||| |||| ||||| || || || || || ||
Sbjct 3064469 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAAGAGTCCACCCTTCACCTCGT 3064414
>seq10
Length=1051362
Score = 123 bits (136), Expect = 6e-23
Identities = 138/183 (75%), Gaps = 6/183 (3%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACAC 177985
|||||| || || || || || || || || |||||||| || || ||| |||||
Sbjct 358654 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGC---GACAC 358710
Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045
|||||| |||||||| ||||| |||||||| || || || || ||||| ||||||||
Sbjct 358711 CATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAACG 358770
Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105
|| ||||||||||| || |||||||| ||||| | ||||| ||| || ||| ||||
Sbjct 358771 TCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCA 358830
Query 178106 AAA 178108
||
Sbjct 358831 GAA 358833
>seq12
Length=996256
Score = 104 bits (114), Expect = 6e-17
Identities = 182/264 (69%), Gaps = 6/264 (2%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGG---CAAATGGCATCTTTGTATGCGATGAAAGGCATTCC 214184
||| ||||||||||| |||||| ||| ||||| ||||| ||||| || | ||
Sbjct 677125 GTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCATCCTTGTAAAGCATGAAGGGGTTACC 677069
Query 214185 CACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTT 214244
||| ||||| | || ||| || ||| || | || ||||| | | |||
Sbjct 677068 AGTCTCAGTCTGAGCCTCGAGGATGGCATACCACAGCTTCTGAGCCTTGAAGGTCTTACG 677009
Query 214245 GGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATC 214304
| | | ||||| || |||||||| || || |||| ||||| ||| |||||||| ||
Sbjct 677008 GCCACGGCCCTCCTTCTCGTACTTCTCGTACAGAGCATCAAACTCCTCGCCGTAGACGTC 676949
Query 214305 ATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCT 214364
||||||| || ||||||||||||||||| ||| |||| | || || || || |
Sbjct 676948 GGCAAGACCAGGGGCCTCGTTGGGGCAGAACAGAGTCCAGTCACCGTTGGCCTCAACACG 676889
Query 214365 TTTCATGAAAAGGTCGGAAGTCCA 214388
|||||||| || || | |||||
Sbjct 676888 CTTCATGAACAGATCAGGGGTCCA 676865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203727683600232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |