Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pestalotiopsis_20sp._20JCM_209685_20[genbank_20GCA_5F001599175.1_202
016-03-01] 13 sequences; 48,230,023 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 7e-18
>seq1
Length=8787864
Score = 105 bits (116), Expect = 7e-18
Identities = 335/508 (66%), Gaps = 15/508 (3%)
Strand=Plus/Minus
Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733
||||||| || | ||||| || ||||| ||||| || ||||| | || || || ||||
Sbjct 4219078 TTTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCT 4219019
Query 16734 CCATGAAATCAAAAGGATTAGT--AGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791
||||||| || || || || || ||| | | | || | | | || || || |||
Sbjct 4219018 CCATGAAGTCGAAGGGGTTGGTGGAGCGGTAGACCTTCTCG--TTGCCGAGGGCGACGAG 4218961
Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851
| | || || || || || || || || ||| | | | ||||||| || | ||
Sbjct 4218960 CAGACGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAG 4218901
Query 16852 A-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910
| || | || ||||| || |||| || ||||| || | || || || ||| |
Sbjct 4218900 AGCGCAG-GGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTCGACAGCGTCGACAATGA 4218842
Query 16911 TA--CTAG-CAA-CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACAT 16966
| || | ||| ||| || || || |||| |||| | | || |||| || ||
Sbjct 4218841 TCTTCTGGACAATCTCCTTGCTGGGGCGGT---TGTTGAGG-TGAGAGAACAACAAGCAA 4218786
Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026
||||| ||| || | |||||||| | ||| || ||||| || || |||| ||
Sbjct 4218785 GCGAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 4218726
Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086
|||||| || || ||||| ||||| || || | |||||| | ||| ||||| |||
Sbjct 4218725 GGCATCAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGCACCACTGAAGAAGATA 4218666
Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146
|||||||||| ||||| ||||| || || | || | |||| || | || | |||
Sbjct 4218665 CCCTCGACGGCAGCAAAGGCGATCAAGCGCTGAGCAAAGGTCGACTCCTCGTCAGTGATC 4218606
Query 17147 CATTTCTGCACCCACTCGG-CTTTTTGC 17173
|| || | |||| |||| ||| ||||
Sbjct 4218605 CACTTGAGAGCCCAGTCGGCCTTCTTGC 4218578
Score = 98.7 bits (108), Expect = 1e-15
Identities = 200/295 (68%), Gaps = 3/295 (1%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || ||||||||||| || ||| | |||||||| ||||||||||| |||||
Sbjct 4218463 ATGTAGGTATCGATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGG 4218404
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| |||||||| || || | || || || || || ||| || || | ||
Sbjct 4218403 AAACCGTAGAAGCATCGTGCCTCGGGGATCTGGACCTCGCCGCTGAAACGCTCAACCAGG 4218344
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| || || ||||||||||| |||||||| || |||| || || ||||| |||
Sbjct 4218343 TTCTCATTGACGATGCCGTCAGAGGCGGCGAAGAAGGCCAGGATGTGGGAGATGAAGTAT 4218284
Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
| ||||| || || | | |||||| | | ||| ||||| | ||| | ||
Sbjct 4218283 TGCTCGTCTTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCC 4218224
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGT 17525
|| | ||||| || |||| ||||| || ||||| | ||| || | || ||
Sbjct 4218223 TCAGCAGTCCAGAAGGAAGCCTGAGCCTTCTTGTACATTTGCCAGATCTGATAGT 4218169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545515898840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |