Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pestalotiopsis_20sp._20JCM_209685_20[genbank_20GCA_5F001599175.1_202 016-03-01] 13 sequences; 48,230,023 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 >seq1 Length=8787864 Score = 105 bits (116), Expect = 7e-18 Identities = 335/508 (66%), Gaps = 15/508 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||||| || ||||| ||||| || ||||| | || || || |||| Sbjct 4219078 TTTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCT 4219019 Query 16734 CCATGAAATCAAAAGGATTAGT--AGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 ||||||| || || || || || ||| | | | || | | | || || || ||| Sbjct 4219018 CCATGAAGTCGAAGGGGTTGGTGGAGCGGTAGACCTTCTCG--TTGCCGAGGGCGACGAG 4218961 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 | | || || || || || || || || ||| | | | ||||||| || | || Sbjct 4218960 CAGACGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAG 4218901 Query 16852 A-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 | || | || ||||| || |||| || ||||| || | || || || ||| | Sbjct 4218900 AGCGCAG-GGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTCGACAGCGTCGACAATGA 4218842 Query 16911 TA--CTAG-CAA-CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACAT 16966 | || | ||| ||| || || || |||| |||| | | || |||| || || Sbjct 4218841 TCTTCTGGACAATCTCCTTGCTGGGGCGGT---TGTTGAGG-TGAGAGAACAACAAGCAA 4218786 Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 ||||| ||| || | |||||||| | ||| || ||||| || || |||| || Sbjct 4218785 GCGAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 4218726 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 |||||| || || ||||| ||||| || || | |||||| | ||| ||||| ||| Sbjct 4218725 GGCATCAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGCACCACTGAAGAAGATA 4218666 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 |||||||||| ||||| ||||| || || | || | |||| || | || | ||| Sbjct 4218665 CCCTCGACGGCAGCAAAGGCGATCAAGCGCTGAGCAAAGGTCGACTCCTCGTCAGTGATC 4218606 Query 17147 CATTTCTGCACCCACTCGG-CTTTTTGC 17173 || || | |||| |||| ||| |||| Sbjct 4218605 CACTTGAGAGCCCAGTCGGCCTTCTTGC 4218578 Score = 98.7 bits (108), Expect = 1e-15 Identities = 200/295 (68%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||||||||| || ||| | |||||||| ||||||||||| ||||| Sbjct 4218463 ATGTAGGTATCGATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGG 4218404 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| |||||||| || || | || || || || || ||| || || | || Sbjct 4218403 AAACCGTAGAAGCATCGTGCCTCGGGGATCTGGACCTCGCCGCTGAAACGCTCAACCAGG 4218344 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || || || ||||||||||| |||||||| || |||| || || ||||| ||| Sbjct 4218343 TTCTCATTGACGATGCCGTCAGAGGCGGCGAAGAAGGCCAGGATGTGGGAGATGAAGTAT 4218284 Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 | ||||| || || | | |||||| | | ||| ||||| | ||| | || Sbjct 4218283 TGCTCGTCTTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCC 4218224 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGT 17525 || | ||||| || |||| ||||| || ||||| | ||| || | || || Sbjct 4218223 TCAGCAGTCCAGAAGGAAGCCTGAGCCTTCTTGTACATTTGCCAGATCTGATAGT 4218169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545515898840