Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pestalotiopsis_20sp._20JCM_209685_20[genbank_20GCA_5F001599175.1_202 016-03-01] 13 sequences; 48,230,023 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 129 7e-25 seq1 100 3e-16 seq6 95.1 1e-14 >seq5 Length=5891385 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||||| |||| || ||||||||| || ||||| |||| | Sbjct 1784906 CCTCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 1784847 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||||||||| || ||||| ||||||||||| | || Sbjct 1784846 AGGGTTCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGGGGG 1784787 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| | || | | ||| | | | ||||| ||| || || Sbjct 1784786 ATTCCCTCCTTGTCC-TGAATCTTGCTCTTCACGTTGTCGATTGTGTCCGACGACTCAAC 1784728 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || ||||| || ||||| |||||||| ||||| Sbjct 1784727 TTCCAATGTGATGGTCTTTCCCGTGAGGGTCTTGACAAAGATCTGCAT 1784680 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||| ||||| ||||||||| ||| || || | || || Sbjct 1785116 ACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGGCCATCCTCC 1785057 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| ||||| || || || ||||||||||| | || | | |||||||||| | Sbjct 1785056 AACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 1784997 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || |||| ||| | | | |||||| || || || || | ||| || || || Sbjct 1784996 ATCTTGCTCTTGA-CGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGTAATCGTCTT 1784938 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || || || ||||| Sbjct 1784937 TCCGGTCAGGGTCTTGACGAAAATCTGCAT 1784908 >seq1 Length=8787864 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || | || || |||||||| |||||||| Sbjct 8578533 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAA 8578592 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 8578593 GATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 8578652 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 8578653 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTAAGGGTCTTGAC 8578712 Query 43172 AAAGATTTGCATTTT 43186 ||||| |||||||| Sbjct 8578713 GAAGATCTGCATTTT 8578727 >seq6 Length=3941639 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || ||| || || | || || |||||||| |||||||| | Sbjct 189207 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGA 189266 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 189267 TCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 189326 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || ||||| |||| |||||||| |||||||| || ||||| || | Sbjct 189327 CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 189386 Query 43174 AG 43175 || Sbjct 189387 AG 189388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817507079640