Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pestalotiopsis_20sp._20JCM_209685_20[genbank_20GCA_5F001599175.1_202 016-03-01] 13 sequences; 48,230,023 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 194 2e-44 seq1 104 3e-17 >seq3 Length=6663688 Score = 194 bits (214), Expect = 2e-44 Identities = 464/695 (67%), Gaps = 10/695 (1%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||||| | ||| || |||| | || || || ||||| || Sbjct 2588834 AGGGCACTCGTTGGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAA 2588775 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| || |||||||| || || | || || || | | | ||||| ||||| Sbjct 2588774 GAGGTCGGGAATCCAGAGGGCCAGGAACAGGTCACGGGCGCGGACCTCCTCCTTTCCGTG 2588715 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| || || |||||| | | | ||| || ||||| || || | ||| ||||| Sbjct 2588714 GTTCTTGCGGAGGTCAAGGAACTCGAAGACATCCGAGTGCCAAGGCTCGAGGTAGATGGC 2588655 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | ||||| || ||||| || ||||| || | |||||| || ||||| || | || Sbjct 2588654 AAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGAC 2588595 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| || | |||||||| || | || ||||| |||| || || |||| | Sbjct 2588594 ACGAAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTTCCGGCAATGTAAGATCCAGT 2588535 Query 63521 GGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| || | |||| |||| ||||| || ||||| || ||||| | ||| Sbjct 2588534 GGCACGGATGCGGTGGGCGTTGA--GACCGATTCCACCGGCCATCTTGGAGATCATGGCG 2588477 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | ||||| ||||| || || ||||| ||||| |||||| || || || Sbjct 2588476 CAGGTCTTGAGGGTGTCGTAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 2588417 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || ||| | || | | ||| || || || || | ||| || || ||||| || Sbjct 2588416 CAAGAAGAGAGCTGAGCCTGGGGAGTGCCGGCGTTGAAGAGGGTGGGGGAGGCGTGTGTG 2588357 Query 63699 AACCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 || | || | || | |||| ||||| |||||||| | || | ||| || | Sbjct 2588356 AAGAACTTCTGGGACATGTAG-TTGTAGGTCTCAATGACCTTCTCGACATC--ATCGCCC 2588300 Query 63758 AA--TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 | | || || || |||||||| | ||||||||||||||| || |||| ||| ||| Sbjct 2588299 CAGATACCGACAGCAACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTTG 2588240 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 || ||||| | ||||||| |||| ||| || || ||||| || | ||| ||||| Sbjct 2588239 ATCTTCAAGAGGTAGGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCG 2588180 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || ||||| | ||| |||| | |||| ||||| Sbjct 2588179 CGATCGTAGACAATGGCCGAGTCCAGCTCTTCCTT 2588145 >seq1 Length=8787864 Score = 104 bits (114), Expect = 3e-17 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| ||| || ||||| ||| ||| ||||||||||| | | || | ||||| || Sbjct 4218797 AACAACAAGCAAGCGAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 4218738 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || |||||||| || | ||| || ||||| ||||| | || Sbjct 4218737 AAGGTCAGACCAGGCATCAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGCACCA 4218678 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC- 33750 |||||||| || || || ||||||||||| || | | || || | || | | Sbjct 4218677 CTGAAGAAGATACCCTCGACGGCAGCAAAGGCGATCAAGCGCTGAGCAAAGGTCGACTCC 4218618 Query 33751 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 |||| |||||||| ||||||| ||||||||||| Sbjct 4218617 TCGTCAGTGATCCACTTGAGAGCCCAGTCGGCCTTCTT 4218580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817497654640