Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pestalotiopsis_20sp._20JCM_209685_20[genbank_20GCA_5F001599175.1_202 016-03-01] 13 sequences; 48,230,023 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 141 3e-28 seq3 96.9 1e-14 >seq5 Length=5891385 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 1784394 CATACCACCACGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1784335 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || ||||| |||||||| || || |||||||| || Sbjct 1784334 GGAGAGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGG 1784275 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||| || || | || ||||| ||||| | ||| || | || Sbjct 1784274 GGGAATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCCGAGGACTC 1784215 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 1784214 GACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 1784164 Score = 136 bits (150), Expect = 1e-26 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || | || ||||| ||||| ||||| || || || || Sbjct 1784910 CATACCTCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTC 1784851 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||||| || || || || || || ||||||||||| ||||| ||||| || || Sbjct 1784850 AGACAGGGTTCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGG 1784791 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || ||||| || || |||||||| || ||| || || || || || | || || | | Sbjct 1784790 GGGGATTCCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATTGTGTCCGACGACT 1784732 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||| | ||| | |||||||| || || || || ||||| |||||||| Sbjct 1784731 CAACTTCCAATGTGATGGTCTTTCCCGTGAGGGTCTTGACAAAGATCTGCAT 1784680 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | ||||| | || ||||||||||| || ||||| || || Sbjct 1785141 TTACTGACCGCCACGGAGACGGAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTA 1785082 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||| | || || ||||| || | || || ||||||||||| || || ||||| || Sbjct 1785081 ATCACTCAGGGTGCGGCCATCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 1785022 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATG 140682 || || || || || || ||||| || || ||| || || || || |||| || |||| Sbjct 1785021 CGGGGGGATACCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATCGTGTCTGATG 1784963 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || |||| ||||||||||| || || || || ||||||||||| Sbjct 1784962 ACTCGACTTCCAGCGTAATCGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 1784908 Score = 129 bits (142), Expect = 2e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || || ||||| || ||||| || || || Sbjct 1784682 CATACCACCACGCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 1784623 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || ||||| ||||| || ||||| || || || ||||| |||||||| || Sbjct 1784622 GGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCCGG 1784563 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || ||||| || || | || || | ||| Sbjct 1784562 GGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGATTC 1784503 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||||||||| || || || || Sbjct 1784502 CACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 1784464 >seq3 Length=6663688 Score = 96.9 bits (106), Expect = 1e-14 Identities = 409/641 (64%), Gaps = 9/641 (1%) Strand=Plus/Minus Query 349277 GATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATT 349336 || || |||||| | || || || || | ||| || || || || || ||||| |||| Sbjct 6399415 GACCAGGGTAACCGCACCACTCCCTCGTTCGTCGCCTTCACAGACACCGAGCGATTGATC 6399356 Query 349337 GGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAG 349396 || ||| |||| || || |||| || || || || || ||||| || || || ||| Sbjct 6399355 GGAGATGCTGCCAAGAACCAAGTCGCAATGAACCCGAACAACACGGTCTTCGACGCCAAG 6399296 Query 349397 CGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATCTAAAACATTTTC 349454 || || ||||| | | || |||| | | | || |||| | || || || | Sbjct 6399295 CGTCTGATTGGCCGCAAGTTCGCTGATGCCGAGGTTCAGG--CTGACATGAAGCACTTCC 6399238 Query 349455 CTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTG 349514 | || | ||||| || | ||| || || | | ||||| || || || || | Sbjct 6399237 CCTTCAAGGTTGTCGACAAGGCCGGC---AAGCCCAACGTCGAGGTCGAGTACAAGGGCG 6399181 Query 349515 A-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAA 349573 | | || || || |||||| || || || || ||| | | | || ||| || Sbjct 6399180 AGAGCAAGACC-TTCACACCCGAGGAGATCTCGTCCATGATCCTGATCAAGATGCGTGAG 6399122 Query 349574 ATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTAT 349633 | || || | || | |||| || || || | ||||| || || || || ||||| Sbjct 6399121 ACCGCCGAGTCTTACCTCGGTGGCACCGTTACCAACGCTGTCATCACCGTCCCCGCCTAC 6399062 Query 349634 TTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTT 349693 || || || | || ||| || || || || || || ||| | || | || || Sbjct 6399061 TTCAACGACTCGCAACGTCAGGCCACCAAGGACGCCGGTCTCATCTCCGGCCTCAACGTC 6399002 Query 349694 CTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGT 349753 || | || || || || ||||| || || || ||||| || || || || || | | Sbjct 6399001 CTCCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCCTACGGTCTCGACAAGAAGGCC 6398942 Query 349754 GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTA 349813 || || || | || || || ||| | ||||||||||| || ||||| || || Sbjct 6398941 GAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGTGGTGGTACCTTCGATGTCTCTCTC 6398882 Query 349814 CTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT 349873 || || |||| ||||| || || || || || | || || ||||| || || || ||| Sbjct 6398881 CTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTCACCTGGGT 6398822 Query 349874 GGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 || || || || || || ||||| ||| ||||| || || Sbjct 6398821 GGTGAGGACTTCGACAACCGTCTGGTTAACCATTTCGTGAA 6398781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254147615439