Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pestalotiopsis_20sp._20JCM_209685_20[genbank_20GCA_5F001599175.1_202 016-03-01] 13 sequences; 48,230,023 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq5 140 8e-28 seq6 125 2e-23 >seq1 Length=8787864 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| ||||| ||||| || || || |||| ||||| ||| || || Sbjct 8578503 ACGGAGGCGCAGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 8578562 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 8578563 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCC 8578622 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 8578623 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 8578682 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | || || | ||| | |||||||| Sbjct 8578683 GGTGATAGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCATTTT 8578727 >seq5 Length=5891385 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||||||||| ||||| || || |||| ||||| |||| | ||| Sbjct 1784385 ACGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 1784326 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || || || || ||||| || Sbjct 1784325 ACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCC 1784266 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| ||| || ||||| || |||| || || || | Sbjct 1784265 TTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCCGAGGACTCGACCTCAAG 1784206 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 1784205 AGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 1784164 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| ||||| || || || | ||||| |||| | || | ||||| Sbjct 1784663 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCC 1784604 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || || || || || || |||||||| Sbjct 1784603 TCAAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 1784544 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| || | |||||| || | ||||| ||| Sbjct 1784543 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGATTCCACCTCGAGGGTGATGGTC 1784484 Query 225682 TTGCCCGT 225689 || || || Sbjct 1784483 TTTCCGGT 1784476 >seq6 Length=3941639 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| || || | ||||| || |||||||| ||||||||||| Sbjct 189209 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATC 189268 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || || ||||| |||||||| |||||||| ||| ||| ||| Sbjct 189269 AGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 189328 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| || | ||||| || | ||||| ||||||||||||| || || | ||| Sbjct 189329 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 189387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531001369022