Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq623 107 1e-18 seq96 105 5e-18 seq667 95.1 9e-15 >seq623 Length=266034 Score = 107 bits (118), Expect = 1e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| |||||||| ||||| | | | | | || || | ||| ||||| ||| | ||| Sbjct 249705 TTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATC 249646 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 | ||||||||||||| |||||||||||| ||||| ||| ||| ||| ||| | || Sbjct 249645 AGACGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCG 249586 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 ||||||||| ||| || || | || ||||||||||| || || || || || || Sbjct 249585 ATGGTATCGGATGATTCCACCTCAAGAGTGATGGTTTTACCCGTGAGGGTCTTGACGAA 249527 >seq96 Length=163266 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||||||| | | | | ||||||| | ||| Sbjct 52842 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGACCGTCTTCGAGTTGC 52783 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| |||||||||||| ||| || || || || || || ||| Sbjct 52782 TTGCCGGCGAAGATCAGACGTTGTTGGTCAGGTGGGATGCCCTCCTTATCCTGGATCTTG 52723 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||||||| ||| || || | ||| || || ||||| || Sbjct 52722 GACTTGACATTGTCGATGGTATCGGACGATTCCACCTCAAGGGTGATCGTCTTACCCGTG 52663 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||| Sbjct 52662 AGGGTCTTGACGAAGATTTGCAT 52640 >seq667 Length=237617 Score = 95.1 bits (104), Expect = 9e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || || || |||||||||||||| ||| | | | ||||| | ||| Sbjct 144129 ATGGAGAGTAGACTCCTTCTGAATGTTGTAATCGCTCAGAGTGCGACCATCTTCGAGTTG 144188 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | |||| ||||||||||||| ||||| || || ||||| ||| || Sbjct 144189 TTTGCCGGCAAAGATCAGACGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTT 144248 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || || |||||| | ||| || || | || ||||| || || || Sbjct 144249 GGACTTGACATTGTCGATAGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTTCCGGT 144308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176101330582