Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq667 114 3e-20 seq689 102 2e-16 >seq667 Length=237617 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || |||||||| || || || ||||| | ||| ||| Sbjct 144121 AGGACAAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCGCTCAGAGTGCGACCATCT 144180 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| || ||||| || || | ||||| || ||||| || || || || ||| Sbjct 144181 TCGAGTTGTTTGCCGGCAAAGATCAGACGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCC 144240 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || ||||| || | |||||| || ||| ||||| || || || ||| Sbjct 144241 TGAATCTTGGACTTGACATTGTCGATAGTATCGGAAGATTCGACCTCAAGAGTGATGGTC 144300 Query 104528 TTACCAGT 104535 || || || Sbjct 144301 TTTCCGGT 144308 Score = 100 bits (110), Expect = 7e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || || || || || || | ||| || |||||||| || || || Sbjct 143591 ATTCCGCCACGTAATCTCAGCACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCT 143650 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| || ||||| ||||| ||||||||||| || || | || ||||| || Sbjct 143651 GACAAAGTTCGGCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGGCGTTGCTGATCTGGT 143710 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || ||||| || ||||| | ||| || || || | || || | || Sbjct 143711 GGAATCCCCTCCTTATCTTGGATCTTGGATTTCACGTTATCAATCGTGTCTGATGACTCG 143770 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 143771 ACTTCCAATGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATCTGCAT 143820 >seq689 Length=208963 Score = 102 bits (112), Expect = 2e-16 Identities = 336/515 (65%), Gaps = 12/515 (2%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA- 268800 |||||||| |||| | || || || ||||||| ||||| | |||||||| | || Sbjct 94757 ATGTACAAGAAGGCTGAAGCCTCATTCTGGACTGCCGAAGAGATCGATCTGTCAAAGGAT 94698 Query 268801 CTTAATAGATTGGAAAAATT---TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCT 268857 ||| | || ||||| ||| | || || || | || || || || |||| Sbjct 94697 CTTCAC-GACTGGAACAATCGCCTCAATGACGATGAGCGCTACTTCATCTCCCATGTTCT 94639 Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 ||| || ||||| | | |||||||| || || || || | || || |||| | Sbjct 94638 TGCCTTCTTTGCCGCTTCAGATGGTATTGTGAATGAGAACTTGGTCGAACGTTTCTCTGG 94579 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 || || ||| | || ||||| |||| || ||||| |||||||| || || || || Sbjct 94578 TGAAGTTCAGGTCCCAGAAGCACGATGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 94519 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037 || ||||||| ||| ||| | || || || || || | || ||| | | |||| Sbjct 94518 CCACTCAGAGACATACTCTCTTCTCATCGACACATACATTAAGGAGC-CAAAGCAGAGAA 94460 Query 269038 AAGACTATTTTC--TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCT 269095 | ||| | ||| | | || || || ||| | | || || | || ||||| Sbjct 94459 CATACT-TGTTCGATGCCATTGATACCATCCCATGTATCCGCAAGAAGGCCGATTGGGCC 94401 Query 269096 CTGAAATGGATAAACGATAGCGCGCCTTA---CGGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 | | ||||| | || | ||| || || | | ||||||||||| || Sbjct 94400 ATTCACTGGATTCAAGACCAAGAATCTTGTTTCGCTCAACGTCTCGTTGCTTTTGCTGCG 94341 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || ||||| ||||| ||||| |||||||| | ||||| ||||||||||| | || Sbjct 94340 GTTGAGGGTATCTTCTTCTCGGGTTCTTTTGCATCCATCTTCTGGTTGAAGAAGCGCGGT 94281 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGAT 269247 | ||||| || | || ||||||||||||||||| Sbjct 94280 ATGATGCCGGGTCTTACATTCTCTAACGAATTGAT 94246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151388043891016