Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq667 141 6e-29 seq107 87.8 1e-12 >seq667 Length=237617 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || | ||||||||| || ||||||||||||||||||||||||||||| || Sbjct 143365 ACCACCACGTAATCTCAACACCAAGTGGAGAGTGCTCTCCTTTTGAATATTGTAATCTGA 143424 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| || | || || |||||||| || || || || |||||||| ||||| | || Sbjct 143425 CAAAGTTCGGCCATCTTCCAATTGTTTACCTGCGAAGATCAGGCGTTGCTGATCTGGTGG 143484 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| || || ||||| || | | || ||| ||||| Sbjct 143485 AATTCCTTCCTTGTCCTGGATCTTGGATTTCACGTTGTCAATTGTGTCTGATGACTCAAC 143544 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||| || ||||| |||||||| || ||||| || || ||||| Sbjct 143545 TTCCAGTGTGATTGTTTTGCCCGTCAAAGTCTTCACAAAGATTTGCAT 143592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||||||||||| ||||| |||||||| |||||| || | || || | ||| Sbjct 143618 TGGAGTGTGCTCTCCTTCTGAATGTTGTAATCTGACAAAGTTCGGCCATCTTCCAGTTGC 143677 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| || |||||||| ||||| | || | || || || || || || Sbjct 143678 TTTCCAGCAAAGATCAGGCGTTGCTGATCTGGTGGAATCCCCTCCTTATCTTGGATCTTG 143737 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||| || | | || ||| || ||||| ||||| || || || || ||| Sbjct 143738 GATTTCACGTTATCAATCGTGTCTGATGACTCGACTTCCAATGTGATCGTCTTTCCGGTC 143797 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || |||||||| Sbjct 143798 AACGTCTTCACAAAGATCTGCAT 143820 >seq107 Length=66004 Score = 87.8 bits (96), Expect = 1e-12 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| | |||||||| ||||| ||| |||||| ||||| ||||||||| Sbjct 32776 ATGTCACCGACCCCTTCTACCGTTACAAGATGGAACGCATCCAATCCAAGATCGAGGGTA 32835 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAA--GTCGCTAAGGCGCTCGG 6304 | || ||||||||||||||||| | |||||| | | | | ||| | | | || | Sbjct 32836 AAGGCAACGGTATTAAAACCGTTGTCGTCAACCT--CAGCAGTGTCTCCCAATCACTGGC 32893 Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGAC 6358 ||||||| | | ||| || ||||| || || | ||||||||| ||||| || Sbjct 32894 ACGCCCTCCATCTTACGTGATTAAATACTTTGGCTTCGAACTTGGTGCTCAAAC 32947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944334317362