Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015-
05-13] 702 sequences; 27,513,354 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq667 132 4e-26
seq96 113 4e-20
>seq667
Length=237617
Score = 132 bits (146), Expect = 4e-26
Identities = 156/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||||||||| || ||| | |||||| | ||||| ||||| ||
Sbjct 143593 AATGCAAATCTTTGTGAAGACTTTGACGGGCAAAACAATCACACTGGAAGTTGAGTCATC 143534
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || |||| || ||| ||||| ||||| |||||||| || ||
Sbjct 143533 AGACACAATTGACAACGTGAAATCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCA 143474
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | || || || || |||||||| ||||||| || ||| || ||||||||
Sbjct 143473 GCAACGCCTGATCTTCGCAGGTAAACAATTGGAAGATGGCCGAACTTTGTCAGATTACAA 143414
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208
||||||||| || ||| || || || |||
Sbjct 143413 TATTCAAAAGGAGAGCACTCTCCACTTGGTG 143383
Score = 116 bits (128), Expect = 3e-21
Identities = 143/191 (75%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAG- 25079
||||| || ||||||| | || || || || || || |||||||| || || |||
Sbjct 144308 ACCGGAAAGACCATCACTCTTGAGGTCGAATCTTCCGATACTATCGA--CAATGTCAAGT 144251
Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139
| || | ||| ||||| || || ||||| || |||||||| || | || |||||||||
Sbjct 144250 CCAAGATTCAG-GACAAGGAGGGCATTCCTCCCGACCAACAACGTCTGATCTTTGCCGGC 144192
Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199
|||||| | ||||||| ||||||| || |||||||||| ||||| || || || || ||
Sbjct 144191 AAACAACTCGAAGATGGTCGCACTCTGAGCGATTACAACATTCAGAAGGAGTCTACTCTC 144132
Query 25200 CATTTAGTGCT 25210
||| | || ||
Sbjct 144131 CATCTTGTCCT 144121
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||||||| || | |||||| | ||||| ||||| ||
Sbjct 143820 ATGCAGATCTTTGTGAAGACGTTGACCGGAAAGACGATCACATTGGAAGTCGAGTCATCA 143761
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | || |||| || ||| || || || ||||||||||| || ||
Sbjct 143760 GACACGATTGA-TAACGTGAAATCCAAGATCCAAGATAAGGAGGGGATTCCACCAGATCA 143702
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | || ||||| || || ||| | ||||||| || ||| || ||||||||
Sbjct 143701 GCAACGCCTGATCTTTGCTGGAAAGCAACTGGAAGATGGCCGAACTTTGTCAGATTACAA 143642
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
||||| || || ||| || || | ||||| || || | || ||||
Sbjct 143641 CATTCAGAAGGAGAGCACACTCCACCTTGTGCTGAGATTACGTGGCGGAA 143592
>seq96
Length=163266
Score = 113 bits (124), Expect = 4e-20
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || ||||| | ||||| | || ||||| |||||
Sbjct 52640 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTTGAGGTGGAATCGTCC 52699
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| || || ||| || ||| || || || || || ||||||||||
Sbjct 52700 GATACCATCGA--CAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCACCTGACC 52757
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || || |||||||| ||| | ||||| | ||| ||| || ||||||||
Sbjct 52758 AACAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGTACTTTGTCCGATTACA 52817
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
| || || || |||||||| || ||
Sbjct 52818 ACATCCAGAAGGAATCCACCCTTCA 52842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324292608130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |