Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq667 132 4e-26 seq96 113 4e-20 >seq667 Length=237617 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||||||||| || ||| | |||||| | ||||| ||||| || Sbjct 143593 AATGCAAATCTTTGTGAAGACTTTGACGGGCAAAACAATCACACTGGAAGTTGAGTCATC 143534 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || ||| ||||| ||||| |||||||| || || Sbjct 143533 AGACACAATTGACAACGTGAAATCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCA 143474 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || |||||||| ||||||| || ||| || |||||||| Sbjct 143473 GCAACGCCTGATCTTCGCAGGTAAACAATTGGAAGATGGCCGAACTTTGTCAGATTACAA 143414 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||||||| || ||| || || || ||| Sbjct 143413 TATTCAAAAGGAGAGCACTCTCCACTTGGTG 143383 Score = 116 bits (128), Expect = 3e-21 Identities = 143/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAG- 25079 ||||| || ||||||| | || || || || || || |||||||| || || ||| Sbjct 144308 ACCGGAAAGACCATCACTCTTGAGGTCGAATCTTCCGATACTATCGA--CAATGTCAAGT 144251 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 | || | ||| ||||| || || ||||| || |||||||| || | || ||||||||| Sbjct 144250 CCAAGATTCAG-GACAAGGAGGGCATTCCTCCCGACCAACAACGTCTGATCTTTGCCGGC 144192 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 |||||| | ||||||| ||||||| || |||||||||| ||||| || || || || || Sbjct 144191 AAACAACTCGAAGATGGTCGCACTCTGAGCGATTACAACATTCAGAAGGAGTCTACTCTC 144132 Query 25200 CATTTAGTGCT 25210 ||| | || || Sbjct 144131 CATCTTGTCCT 144121 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | |||||| | ||||| ||||| || Sbjct 143820 ATGCAGATCTTTGTGAAGACGTTGACCGGAAAGACGATCACATTGGAAGTCGAGTCATCA 143761 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || |||| || ||| || || || ||||||||||| || || Sbjct 143760 GACACGATTGA-TAACGTGAAATCCAAGATCCAAGATAAGGAGGGGATTCCACCAGATCA 143702 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || || ||| | ||||||| || ||| || |||||||| Sbjct 143701 GCAACGCCTGATCTTTGCTGGAAAGCAACTGGAAGATGGCCGAACTTTGTCAGATTACAA 143642 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || ||| || || | ||||| || || | || |||| Sbjct 143641 CATTCAGAAGGAGAGCACACTCCACCTTGTGCTGAGATTACGTGGCGGAA 143592 >seq96 Length=163266 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| | ||||| | || ||||| ||||| Sbjct 52640 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTTGAGGTGGAATCGTCC 52699 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| || || ||| || ||| || || || || || |||||||||| Sbjct 52700 GATACCATCGA--CAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCACCTGACC 52757 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || |||||||| ||| | ||||| | ||| ||| || |||||||| Sbjct 52758 AACAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGTACTTTGTCCGATTACA 52817 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || |||||||| || || Sbjct 52818 ACATCCAGAAGGAATCCACCCTTCA 52842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324292608130