Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq623 138 1e-27 seq96 132 4e-26 seq667 129 5e-25 >seq623 Length=266034 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || |||||||| |||||||||| |||||| | |||||||| | ||| || |||| Sbjct 249542 ACGGGTAAAACCATCACTCTTGAGGTGGAATCATCCGATACCATCGACAATGTCAAGTCC 249601 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| || ||||||||||| ||||||||||| || || |||||||| Sbjct 249602 AAGATTCAAGACAAGGAAGGAATTCCACCCGACCAACAACGTCTGATTTTCGCCGGCAAG 249661 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || | |||||| |||||| | ||| |||||||| ||||| Sbjct 249662 CAACTTGAGGATGGCCGCACTTTGAGCGACTACAACATCCAAAA 249705 >seq96 Length=163266 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| ||| |||| ||||| |||||| | || Sbjct 52640 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTTGAGGTGGAATCGTCC 52699 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || || |||||||| || ||||| || ||| Sbjct 52700 GATACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAA 52759 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| || | || || || || | |||||||||||| Sbjct 52760 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGTACTTTGTCCGATTACAAC 52819 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||||||| Sbjct 52820 ATCCAGAAGGAATCCACC 52837 >seq667 Length=237617 Score = 129 bits (142), Expect = 5e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || ||| | || || || || |||| ||||| || || | | |||||| | ||| Sbjct 144036 GTCAAGACTCTTACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCAGATACCATCGAC 143977 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 | |||| ||| || || |||||||||||||| |||||||||||||||||||| || Sbjct 143976 AACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGATCAACAACGTCTCATT 143917 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || || ||||| || || |||||| ||| || |||| ||||||||||| || || ||| Sbjct 143916 TTCGCTGGCAAGCAATTGGAGGATGGCCGTACTCTCTCAGATTACAACATCCAGAAGGAA 143857 Query 22411 TCCACC 22416 || ||| Sbjct 143856 TCTACC 143851 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || ||| | ||||||| | ||| || |||| Sbjct 144308 ACCGGAAAGACCATCACTCTTGAGGTCGAATCTTCCGATACTATCGACAATGTCAAGTCC 144249 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| ||||| ||||||||||| || |||||||||||| Sbjct 144248 AAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAACAACGTCTGATCTTTGCCGGCAAA 144189 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | || ||| ||||| | ||||||||||||||| || || || || Sbjct 144188 CAACTCGAAGATGGTCGCACTCTGAGCGATTACAACATTCAGAAGGAGTCTAC 144136 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || ||| |||| | ||||| || | | Sbjct 143820 ATGCAGATCTTTGTGAAGACGTTGACCGGAAAGACGATCACATTGGAAGTCGAGTCATCA 143761 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || || ||||| |||||||| |||||||| ||||| Sbjct 143760 GACACGATTGATAACGTGAAATCCAAGATCCAAGATAAGGAGGGGATTCCACCAGATCAG 143701 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || || || | || ||| ||| || | || ||||||||| Sbjct 143700 CAACGCCTGATCTTTGCTGGAAAGCAACTGGAAGATGGCCGAACTTTGTCAGATTACAAC 143641 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 143640 ATTCAGAAGGA 143630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724408964630