Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq667 111 1e-19 seq698 82.4 7e-11 >seq667 Length=237617 Score = 111 bits (122), Expect = 1e-19 Identities = 163/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA- 45184 |||||||| | || || || |||||||| ||||| ||||| |||| || | Sbjct 143378 CTCAACACCAAGTGGAGAGTGCTCTCCTTTTGAATATTGTAATC--TGACAAAGTTCGGC 143435 Query 45185 -ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| ||||||||||| |||||| | |||| |||||||| || || ||||| ||||| | Sbjct 143436 CATCTTCCAATTGTTTACCTGCGAAGATCAGGCGTTGCTGATCTGGTGGAATTCCTTCCT 143495 Query 45244 TATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 | || || || || ||| | || | || | ||||| || ||||| ||||| || || Sbjct 143496 TGTCCTGGATCTTGGATTTCA-CGTTGTCAATTGTGTCTGATGACTCAACTTCCAGTGTG 143554 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 | |||||||| || | ||| || ||||| |||||||| ||| || Sbjct 143555 ATTGTTTTGCCCGTCAAAGTCTTCACAAAGATTTGCATTCCGCCAC 143600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || | |||| ||| || || || || ||||| || || || ||||| Sbjct 143591 ATTCCGCCACGTAATCTCAGCACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATC- 143649 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| || | ||| |||| ||| ||||| || | |||| |||||||| || | Sbjct 143650 -TGACAAAGTTCGGCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGGCGTTGCTGATCTG 143708 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| || || |||||||| || || ||| | || | || | ||||| || ||| Sbjct 143709 GTGGAATCCCCTCCTTATCTTGGATCTTGGATTTCA-CGTTATCAATCGTGTCTGATGAC 143767 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || | ||| || ||||| | || || ||||| || ||||| Sbjct 143768 TCGACTTCCAATGTGATCGTCTTTCCGGTCAACGTCTTCACAAAGATCTGCAT 143820 >seq698 Length=89367 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 123592 TCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGA 123651 |||| |||| ||| || |||| || | |||||||||||| || ||||||||| | | Sbjct 2331 TCGAGGCACAGACCGAGACTGGAAATCCATTCATGCTCTACAAGGATGCCTGCAACCGAA 2272 Query 123652 AAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCG 123711 | | |||||| | |||||||| || || || | ||| | || |||||||||| | Sbjct 2271 AGAGCAATCAAAAGAACTTGGGTACTATCAAGAGCTCTAACTTGTGTACCGAAATTATTG 2212 Query 123712 AATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 | |||| | | | ||| |||| || || || ||| | ||||| Sbjct 2211 AGTACACTGCTCCAGATGAAGTCGCTGTTTGCAATCTCGCTTC 2169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999233671920