Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq698 215 6e-51 seq689 190 2e-43 >seq698 Length=89367 Score = 215 bits (238), Expect = 6e-51 Identities = 598/913 (65%), Gaps = 4/913 (0%) Strand=Plus/Plus Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 || || ||||| || ||||| || |||| |||| ||| || | || ||||| | ||| Sbjct 2169 GAAGCGAGATTGCAAACAGCGACTTCATCTGGAGCAGTGTACTCAATAATTTCGGTACAC 2228 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCC 48005 | ||| | |||||||||||||| || | ||||| | ||| || || ||| Sbjct 2229 AAGTTAGAGCTCTTGATAGTACCCAAGTTCTTTTGATTGCTCTTTCGGTTGCAGGCATCC 2288 Query 48006 TTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACA 48065 ||||| ||||| || || ||||||| || |||| | || | ||||| | ||||| Sbjct 2289 TTGTAGAGCATGAATGGATTTCCAGTCTCGGTCTGTGCCTCGAGGATAGCGTACCAAAGC 2348 Query 48066 GTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTC 48125 | ||| || || || | | || ||||||||||| | ||| | | Sbjct 2349 TTTTGAGCTTTCATGGTTCGTCGACCACGCCCCTCTTGTTCGTATTTGGCATAAAGGACC 2408 Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 ||||||||||| ||||| || | ||| || ||| |||| ||| || | ||| | | Sbjct 2409 TCAAATTCATCTCCATAGACGTCGGCTAGACCTGGAGCCTCATGAGGGCAGAACAAAGTC 2468 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AA 48244 || || | || |||| |||| ||||||| | ||| || ||||||||||| ||| || Sbjct 2469 CACTCTTGATTCTTTTCAACTCGTTTCATAAAAAGATCAGGAATCCAAAGAGC-ATAGAA 2527 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | || || || |||||| ||||| ||| | || ||||| || || | Sbjct 2528 AAGGTCACGAGCTCGTACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAATTCGAA 2587 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || | |||||||| || | || || || | ||||||||||||| || || || Sbjct 2588 AACGTCCGAGTGCCATGGCTCAAGGTAAATGGCAAAAGCACCTGGTCGTTTGTTGCCACC 2647 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||| ||||| ||||| | || | | ||| || |||||||| || || Sbjct 2648 CTGGTCAACGTATCTAGCAGTGTTGTTGAACACGCGGAGCATGGGAACAATACCGTTGGA 2707 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 |||||| || || ||| ||| ||| | |||| || | ||| | ||| Sbjct 2708 AGAACCATTAGTCCCGCCAATGTAAGAGCCAGTGGCTCGAATTCTGTGAATGTTGAGACC 2767 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| || | || || || | ||||| || | |||||||| |||||||| Sbjct 2768 GATACCACCGGCGGTCTTGGAGATCATGGCACAAGTCTTCAAAGTATCATAGATTCCTTC 2827 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 ||||| || ||| |||| | | | || || ||||| || || ||| ||| || Sbjct 2828 GATACTGTCCTCTTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGAGGAGTACC 2887 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | ||| || | ||||| || || || | || ||| || || | || || || Sbjct 2888 AGCATTGAAAAGGGTTGGGGAAGCGTGGGTGAATGTCTTCAACGACAAAAGCTTGTAGGT 2947 Query 48665 TTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATAT 48723 ||| | ||| || || || || | ||||| | || |||||||| | ||| | Sbjct 2948 TTCCAAGACACGTTCAATGTCATCACCCCAG-ATACCAACAGCAACACGCATCAGCATGT 3006 Query 48724 ATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTT 48783 ||| |||| ||| | |||||| || || | || |||||| |||||| ||| | Sbjct 3007 GTTGTGGTCGCTCAGCTGGCTTGTTACCAATCTTGAGTAGGTATGATCTTTCCATTGTCT 3066 Query 48784 TAAAACCAAAATA 48796 | ||||||||||| Sbjct 3067 TGAAACCAAAATA 3079 >seq689 Length=208963 Score = 190 bits (210), Expect = 2e-43 Identities = 378/559 (68%), Gaps = 7/559 (1%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||| || || ||||| || | | |||||||| ||||| ||||| | | Sbjct 94210 CAGGCAAAATCAGTGTGCAGACCCTCATCACGAGAGATCAATTCGTTAGAGAATGTAAGA 94269 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||||| || | || || |||||||| || || ||||| || || || ||||| Sbjct 94270 CCCGGCATCATACCGCGCTTCTTCAACCAGAAGATGGATGCAAAAGAACCCGAGAAGAAG 94329 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 ||||| || || || ||||||||||| || | || | ||| || || | | ||| Sbjct 94330 ATACCCTCAACCGCAGCAAAAGCAACGAGACGTTGAGCGAAACAAGATTCTTGGTCTTGA 94389 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| | | |||||||| |||||||| | |||||| || || || || | || Sbjct 94390 ATCCAGTGAATGGCCCAATCGGCCTTCTTGCGGATACATGGGATGGTATCAATGGCATCG 94449 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || | || | | || | || || |||| |||| || || | | | ||| | Sbjct 94450 AACAAGTATGTTCTCTGCTTTGGCTCCTTAATGTATGTGTCGATGAGAAGAGAGTATGTC 94509 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 ||||| || || || || || ||||| || ||||| || |||| |||||||| | | Sbjct 94510 TCTGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCTTCTGGGACC 94569 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || ||||||| | | || | ||||||||| || ||||| || || ||||| ||| ||| Sbjct 94570 TGAACTTCACCAGAGAAACGTTCGACCAAGTTCTCATTCACAATACCATCTGAAGCGGCA 94629 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAGGTTAATGTATTCC 19435 || || || | ||||| || || | ||||| ||||| | || |||| Sbjct 94630 AAGAAGGCAAGAACATGGGAGATGAAGTAGCGCTCATCGTCATTGAGGCGATTG--TTCC 94687 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | || | || ||| || || | ||| | ||||| | ||||| || || || || || | Sbjct 94688 AGTCGTGAAGATCCTTTGACAGATCGATCTCTTCGGCAGTCCAGAATGAGGCTTCAGCCT 94747 Query 19496 TTTTATACATGTTCCATAT 19514 | || ||||| | ||| || Sbjct 94748 TCTTGTACATTTGCCAGAT 94766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103867495280