Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq681 125 6e-23 seq279 114 1e-19 seq667 87.8 1e-11 >seq681 Length=139357 Score = 125 bits (138), Expect = 6e-23 Identities = 459/711 (65%), Gaps = 11/711 (2%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| || ||||| |||| |||||||| | ||||| || | || || ||| | Sbjct 110193 GCTCTCCGACGTCTCCGAACAGCTTGCGAGCGTGCCAAGCGTACCCTATCTTCTTCAGCA 110252 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| |||||||| | || || | || ||||| ||||||| |||| | || | Sbjct 110253 CAAACATCTATTGAAATCGACTCTCTTTTCGAGGGTATTGATTTCTATACCTCAATCACC 110312 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || ||||| || | || || ||||| | || || || ||||| || Sbjct 110313 CGTGCTCGCTTTGAGGAACTCTGCCAAGACCTCTTCCGCTCCACCATGGAGCCAGTTGAG 110372 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | | ||| | || || || ||||| || ||||||||||| | ||||| Sbjct 110373 CGTGTCCTCCGTGATGCTAAAATCGACAAATCATCTGTCCATGAAATTGTCTTGGTTGGA 110432 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAA 552192 || || || | || || || | ||| ||| ||| || ||| || || Sbjct 110433 GGTTCCACCCGTATCCCGCGTATCCA-GAAGCTTGTCTCCGACTTCTT-CAACGGCAAGG 110490 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | ||| | | | || || ||||||||||||||||| ||||| || | || || | Sbjct 110491 AGCCAAACAAGTCTATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAGGCTG 110550 Query 552253 CTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTA 552309 | ||||| || || | || | | || | || || | ||| | ||| | ||||| Sbjct 110551 CCATTCTCTCAGGTGACACATCCTCCAAGTCCACCAACGAAATTCTTCTTCTCGATGTCG 110610 Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 | || | ||||| ||| | || || | ||| ||| ||||||| ||||||| | | | Sbjct 110611 CCCCATTGTCTCTCGGTATCGAGACTGCTGGCGGTGTTATGACACCTCTTATCAAGCGCA 110670 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429 | ||||| || || || || || ||| || || || || || || ||| ||| Sbjct 110671 ACACTACAATCCCAACGAAGAAGTCAGAGACATTCTCCACATACTCTGACAACCAACCTG 110730 Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489 ||| |||||| ||| ||| || || | ||| || || || || | || | Sbjct 110731 GTGTGCTCATTCAAGTTTATGAGGGTGAGCGTGCCCGCACCAAGGACAACAACCTGCTCG 110790 Query 552490 GTACTTTT--AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 | | ||| | ||| | ||||| || || |||||||| || || || |||||||| || Sbjct 110791 GAAAGTTTGAACTTTCG--GGTATCCCACCGGCTCCTCGCGGTGTTCCACAAATTGAGGT 110848 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||| |||||| | |||||||| || ||| |||| || ||||| ||| || Sbjct 110849 TACCTTCGATCTTGATGCCAACGGTATTATGAACGTTTCTGCTCTTGAGAA 110899 >seq279 Length=267861 Score = 114 bits (126), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| ||||| || || || ||| ||||||||||| || || || ||| Sbjct 219212 GCAGTCATTACTGTGCCAGCCTACTTCAACGACAACCAACGTCAAGCCACCAAGGACGCT 219153 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||||||||||||| ||||| ||||| ||||| || || ||||||||||| || Sbjct 219152 GGTGCTATTGCTGGACTTAACGTTCTCCGTATCATCAACGAGCCAACTGCTGCTGCTATT 219093 Query 550520 GCATATGGACTTG 550532 || || || |||| Sbjct 219092 GCCTACGGTCTTG 219080 >seq667 Length=237617 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| || || || || || || |||||||||||| | | ||||| |||||| | Sbjct 143386 CAAG-TGGAGAGTGCTCTCCTTTTGAATATTGTAATCTGACAAAGTTCGGCCATCTTCCA 143444 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||||| || || || || || | ||||||||| || ||||||||||| || || || | Sbjct 143445 ATTGTTTACCTGCGAAGATCAGGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGA 143504 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTA 563445 | || ||| || |||||||| || | ||| | | ||| || || | ||||| Sbjct 143505 TCTTGGATTTCACGTTGTCAATTGTGTCTG-ATGACTCAACTTCCAGTGTGATTGTTTTG 143563 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||| || || || |||||||| Sbjct 143564 CCCGTCAAAGTCTTCACAAAGATTTGCAT 143592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029258875073980