Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq96 105 2e-17 seq667 98.7 2e-15 seq623 93.3 1e-13 >seq96 Length=163266 Score = 105 bits (116), Expect = 2e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || |||||||| | || |||||| || || || |||| Sbjct 52654 CAAGACCCTCACGGGTAAGACGATCACCCTTGAGGTGGAATCGTCCGATACCATCGACAA 52713 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || || || || || ||| ||| | || ||||| Sbjct 52714 TGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAACAACGTCTGATCTT 52773 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||| | ||||| || | |||||| ||||||||||| ||||||| || || Sbjct 52774 CGCCGGCAAGCAACTCGAAGACGGTCGTACTTTGTCCGATTACAACATCCAGAAGGAATC 52833 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||||||||| | | |||||| Sbjct 52834 CACCCTTCACCTTGTCCTCCGTCTTCGA 52861 >seq667 Length=237617 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251 |||| ||||| || |||||| | || || ||| ||| || || |||| || ||| Sbjct 144310 TCACCGGAAAGACCATCACTCTTGAGGTCGAATCTTCCGATACTATCGACAATGTCAAGT 144251 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 |||||||| || || || || ||| || ||| ||| | || ||||| ||||| | Sbjct 144250 CCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAACAACGTCTGATCTTTGCCGGCA 144191 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 | || | |||||||| | ||| || |||||||||| | ||||| ||||||||||| | Sbjct 144190 AACAACTCGAAGATGGTCGCACTCTGAGCGATTACAACATTCAGAAGGAGTCTACTCTCC 144131 Query 206372 ACCTTGT 206378 | ||||| Sbjct 144130 ATCTTGT 144124 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||| ||||||| || || |||||| | || || || Sbjct 143568 ACGGGCAAAACAATCACACTGGAAGTTGAGTCATCAGACACAATTGACAACGTGAAATCC 143509 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || || ||| | || |||||||| || || Sbjct 143508 AAGATCCAGGACAAGGAAGGAATTCCACCAGATCAGCAACGCCTGATCTTCGCAGGTAAA 143449 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | |||||||| | || || ||| ||||| ||| Sbjct 143448 CAATTGGAAGATGGCCGAACTTTGTCAGATTACAATATTCAAAAGGAGAGCACTCTCCAC 143389 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 143388 TTGGTGTTGAGA 143377 >seq623 Length=266034 Score = 93.3 bits (102), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| |||||| | || |||||| || || || |||| Sbjct 249532 CAAGACCCTCACGGGTAAAACCATCACTCTTGAGGTGGAATCATCCGATACCATCGACAA 249591 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||||| || ||||||||| || ||| ||| | || || || Sbjct 249592 TGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAACAACGTCTGATTTT 249651 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||| ||||| | || ||||| | |||||| ||| |||||| |||| || Sbjct 249652 CGCCGGCAAGCAACTTGAGGATGGCCGCACTTTGAGCGACTACAACATCCAAAA 249705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181810170260542