Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeomoniella_20chlamydospora_20[genbank_20GCA_5F001006345.1_202015- 05-13] 702 sequences; 27,513,354 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq623 102 6e-17 seq667 98.7 7e-16 seq96 98.7 7e-16 >seq623 Length=266034 Score = 102 bits (112), Expect = 6e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||||||||| ||||| |||||||| || || || || | || || | Sbjct 249527 TTCGTCAAGACCCTCACGGGTAAAACCATCACTCTTGAGGTGGAATCATCCGATACCATC 249586 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | || ||| ||||| ||||| | || || || ||||| ||| | Sbjct 249587 GACAATGTCAAGTC-CAAGATTCAAGACAAGGAAGGAATTCCACCCGACCAACAACGTCT 249645 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || |||||||| ||||| || || | |||||||| |||| |||||||| ||||| Sbjct 249646 GATTTTCGCCGGCAAGCAACTTGAGGATGGCCGCACTTTGAGCGACTACAACATCCAAAA 249705 >seq667 Length=237617 Score = 98.7 bits (108), Expect = 7e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691 |||| ||||| || |||||||| || || || || | || ||| | || ||| | || Sbjct 144310 TCACCGGAAAGACCATCACTCTTGAGGTCGAATCTTCCGATACTATCGACAATGTCAAGT 144251 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 | || | || ||||| || || | || || || ||||| ||| | || ||||||||| Sbjct 144250 CCAAGA-TTCAGGACAAGGAGGGCATTCCTCCCGACCAACAACGTCTGATCTTTGCCGGC 144192 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 |||||||| ||||| | |||||| | ||||||||||||| || || ||||| || Sbjct 144191 AAACAACTCGAAGATGGTCGCACTCTGAGCGATTACAACATTCAGAAGGAGTCTAC 144136 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || ||||| |||||||| | ||||| || || | Sbjct 143820 ATGCAGATCTTTGTGAAGACGTTGACCGGAAAGACGATCACATTGGAAGTCGAGTCATCA 143761 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || || || || || | || |||||||| Sbjct 143760 GACACGATTGATAACGTGAAATCCAAGATCCAAGATAAGGAGGGGATTCCACCAGATCAG 143701 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| || || ||||||||||| | || ||||| ||||||||| Sbjct 143700 CAACGCCTGATCTTTGCTGGAAAGCAACTGGAAGATGGCCGAACTTTGTCAGATTACAAC 143641 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||| |||| Sbjct 143640 ATTCAGAAGGAGAGCACA 143623 >seq96 Length=163266 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||||||||| || |||||||| || || || || || | Sbjct 52640 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTTGAGGTGGAATCGTCC 52699 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | || || || || | || || || || Sbjct 52700 GATACCATCGACAATGTCAAGTCCAAGA-TCCAGGATAAGGAGGGCATCCCACCTGACCA 52758 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || |||||||| ||||| ||||||| || ||||| ||||||||| Sbjct 52759 ACAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGACGGTCGTACTTTGTCCGATTACAA 52818 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 52819 CATCCAGAAGGAATCCAC 52836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006708116616