Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq4 123 5e-23
>seq4
Length=1888314
Score = 123 bits (136), Expect = 5e-23
Identities = 178/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 230387 TCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCC 230446
||||||| ||||| || || | || | |||||| | ||| ||| |||| ||| |
Sbjct 1224378 TCATTACCGAAGCTGTCGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCAC 1224319
Query 230447 TTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 230506
| ||||||||||| | | || ||| || |||||||| ||||| || || || |
Sbjct 1224318 TCCTTGGCATGAACTCGAATCTGATGAAGCAATACATCGAGTTCGTCGCTGATCGTCTGC 1224259
Query 230507 TTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGC 230566
|| |||| || || | ||||| || ||||| ||| ||||| |||| |||||||||
Sbjct 1224258 TTCTTGCCCTCGGCAATGAGAAGGTCTACAAGTCTGCCAACCCATTTGACTTTATGGAGA 1224199
Query 230567 TCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGC 230626
||| ||||| || ||||| |||||||| || ||||| || ||||||| || |
Sbjct 1224198 ACATCTCGCTCGCTGGCAAGACTAACTTCTTTGAGAAGCGCGTTGGTGACTACCAAAAAG 1224139
Query 230627 CTGGTGTGATG 230637
||||||| |||
Sbjct 1224138 CTGGTGTCATG 1224128
Score = 86.0 bits (94), Expect = 1e-11
Identities = 116/159 (73%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 229780 ATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTTCCTCTG 229839
|| ||| | |||||||||||||| | ||| ||||||||||| | || || || |||
Sbjct 1225039 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATCT- 1224981
Query 229840 AACGCAG-ACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAA 229898
| || || | || ||||||| | || |||||||||||||| ||| | ||||||
Sbjct 1224980 ATCGAAGGATCTCCACGACTGGAACAACAAGCTCAATGACGACGAGCGTTACTTCATCTC 1224921
Query 229899 ACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937
||| |||| | || ||||| | |||||||| |||||
Sbjct 1224920 CCACGTCCTCGCATTCTTCGCTGCATCCGATGGAATTGT 1224882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823037710730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |