Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq42 197 2e-45 seq4 109 7e-19 >seq42 Length=298824 Score = 197 bits (218), Expect = 2e-45 Identities = 1305/2070 (63%), Gaps = 59/2070 (3%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 || || || || ||||| || || | | ||||| ||||||||||| || ||||| ||| Sbjct 241572 GTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTTTTCAGA 241631 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || || |||||||| || | ||| | ||||| || Sbjct 241632 CCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTGTGGGATCCTTCATG 241691 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || ||||| ||||| ||| || ||| | || || | ||| || ||||||| | | Sbjct 241692 TGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCATTTGGACG 241751 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || |||| |||||||||| || || |||| ||| ||||| |||| | | Sbjct 241752 ATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 241811 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | |||||||| ||||||||||| | || || | ||||| || | ||| | Sbjct 241812 TTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 241871 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | || | | | | || | || || || ||||| || || ||| Sbjct 241872 CAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGACTTGGAACTCGCCA 241931 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | | || | |||| ||| || || ||||| || || | ||||||| || Sbjct 241932 GCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGCACTCATTGAAGCCA 241991 Query 53225 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 | ||||||| | | || || |||| |||||||| || || | || ||||| | |||||| Sbjct 241992 AGAATTTGA-CTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACC 242050 Query 53284 GTATGTTC--TGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAAC 53340 ||||| ||||||| | || | || | ||||||| ||| ||||| | || ||| Sbjct 242051 --ATGTTGCTTGATTTTCTGCTTCA-AGCTGTCCCAATCCCAGAGATCTGTTGGAGTAAC 242107 Query 53341 NNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 53400 || | || || ||| || || || |||| || || Sbjct 242108 ACCCCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATA 242167 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTC--GCCTCTAATGCACCGTAATAAATGGTT 53458 | || || || || || ||| ||| || | ||| | | || ||||| Sbjct 242168 AGTGCCATCAACCTTGGCAAGCTCA--ACTGAAGCAGTGAGTGCGGCATGGTAGATGGTC 242225 Query 53459 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517 |||||||| | | || || | |||| || || | || |||||| | ||||| Sbjct 242226 TCGAAGATTTGAATGTTGAGGTGCTTG-GCCTCTGGAGAGTCGAATGGAAGACG-AAGAG 242283 Query 53518 --AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575 || ||| || || || | || || ||||||| ||||||||| || | || Sbjct 242284 CCAAGAAA-GCATCAGCAAGACCCTGGACACCAACGGCGATAGGTCGGTGGCGGAAGTTG 242342 Query 53576 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635 | | ||||| |||| ||| ||||| || | ||| || || || || | ||| || Sbjct 242343 CTTCTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTTG 242402 Query 53636 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TTGTCCATCTAT 53688 |||| |||| | || || | ||| | | || ||| | |||| ||| | Sbjct 242403 ACAACGACTTGGCAGACTTCGTGAAGTCTCTGGAAGTCATAAGTGCCGTTGTTCATGTCG 242462 Query 53689 TACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 53748 ||| | | | |||| || |||| || || ||||| ||||||| | | | Sbjct 242463 -ACATAGGTAGGAAGGGCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACA 242521 Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTT--GATGGTTCCTAAATTTTGTTGA 53806 || | | ||||||||||| || || | | ||| |||||| || | ||| | || Sbjct 242522 GTACTCAACAATCTCAGTGCAGAGGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGG 242579 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || |||||| |||| || |||||||| ||||| ||||| || | ||||| || |||| Sbjct 242580 TTGCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGA 242639 Query 53867 GATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---T 53923 | || | || | | ||||| | ||||| || | ||| | ||| | Sbjct 242640 GCCTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGTC---TTGCGACCCTTACCT 242696 Query 53924 TCTCTTTCGTATAGT--GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 || | || || | ||| | | | || || || || || | |||| |||| | Sbjct 242697 TCGCGCTCATACTGCTCGTAGAGAGCC--TCGAATTCATCGCCATAGACATCAGCCAAGC 242754 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | || || |||| || |||||||| | |||||| || | | | ||||| ||||| | Sbjct 242755 CTGGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGA 242814 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | |||||||||||||| || || || ||||| | | || ||||| || || Sbjct 242815 AAAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGT 242874 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 ||||||| |||||| ||| || | | | ||| | ||||| || || | || || | Sbjct 242875 GATTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAG 242934 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | | || || || ||||| || || || || | ||| | ||| ||||| || | | Sbjct 242935 CGAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGA 242994 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 ||| | ||| || | || || || || |||||| || || | || ||| ||| Sbjct 242995 CTCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGG 243054 Query 54282 TGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 | || || || | || ||| || || || || || || | || || || | || Sbjct 243055 TAGCGCGGATTCGATGAACGTTG--AGGCCAATTCCACCAGCATTCTTGGAAATCATGGC 243112 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| || || || || ||||| || || ||||| || ||| |||||| | || || Sbjct 243113 GCAAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAA 243172 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 ||| ||| | |||| | ||| || ||| || | || || ||||| ||||| Sbjct 243173 ACATGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGT 243232 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGAT 54518 || || || | || | |||||||| ||||| || || | || ||||| || | | Sbjct 243233 GAAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCG-T 243291 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 |||| || ||||| || ||||| | |||||| || || | ||| ||||||| || | Sbjct 243292 GAATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGA 243351 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 54636 || | ||| ||| || | ||| || || ||||| || | ||| ||||| || Sbjct 243352 GGCGGAGGAGGTATGATCGCTCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAA--TC 243409 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAAC-TACATCCATG- 54694 ||| ||||| | |||| | || || |||| ||| | ||| |||| || | ||| Sbjct 243410 TCGGTCGTAGACAATAGCGGAATTAAGTTCTGCCTCGTGCTTGATAACACACTTGTATGT 243469 Query 54695 GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAA 54754 | | || || || |||||| | || ||||| ||||||||| ||||| | | Sbjct 243470 GGCCTCGCTG--ATCATAGGAGAAAGCTTGCCATTCCGAGGATTGACGTAGTTGTAGAGG 243527 Query 54755 TCCTTCATCAC-TTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 || ||||| || || | | || || || | ||||| || || || || || || Sbjct 243528 TCTGATATCACAGTCGAGAACT-GCTTCTTGGTCTGCTTGTGGAGGTTGGAGACTGCAAT 243586 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATG 54843 || || || || |||||||| || ||||| Sbjct 243587 TCGTGCAGCGAGGATGGCATAGTCGGGATG 243616 >seq4 Length=1888314 Score = 109 bits (120), Expect = 7e-19 Identities = 337/516 (65%), Gaps = 9/516 (2%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||||||||| ||||| || || || || || || ||||| || || | | || || || Sbjct 1224140 TTTTTGGTAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTT 1224199 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT-CAGAAA 23961 ||||| || || |||| |||| | || |||| ||| | | | || | || || Sbjct 1224200 CTCCATAAAGTCAAATGGGTTGGCAGACTTGTAGAC-CTTCTCATTGCCGAGGGCAAGAA 1224258 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 || | ||| ||||| ||||| || ||| ||||||| | | ||||| || | | Sbjct 1224259 GCAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAGGA 1224318 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 || | ||||||||| |||| | || ||||| ||||| ||| || || || || | Sbjct 1224319 GTGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAATGA 1224378 Query 24082 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 |||| || | || | || || | | | || || || | | || || Sbjct 1224379 CG--TCTTGGACAGCTTGCTTGCTTGGGCGGTGCTTCAAGTGAGAGAAGAGAAGGCAAGC 1224436 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 || ||| ||| ||||||||||| | | || | ||| ||||| || || || || | Sbjct 1224437 AAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGC 1224496 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||| || |||||||| || | ||| || |||||||| || || ||| ||||| || || Sbjct 1224497 CATAAGACCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCACTGAAGAAGATACC 1224556 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCA 24316 || || || || || || | || | || || | | | |||| || ||||| Sbjct 1224557 CTCGACGGCGGCGAATGCGACGAGACGTTGAGCAAATGTAGAGTTCTTGTCTTGAATCCA 1224616 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 ||| |||||| ||||||||||| || | ||| || Sbjct 1224617 CTTGACAGCCCAGTCGGCCTTCTTCTTGATACATGG 1224652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721073072080