Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4 156 4e-33
seq16 111 2e-19
>seq4
Length=1888314
Score = 156 bits (172), Expect = 4e-33
Identities = 208/286 (73%), Gaps = 5/286 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| |||||||||||||| |||||||||| ||| ||| | || ||
Sbjct 1225039 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATCTA 1224980
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAA 116751
|| ||||| | | | ||||||| | | | || ||| ||||||| | ||||||
Sbjct 1224979 TCGAAGGATCTCCA-CGACTGGAACAACAAGCTCAATGACGACGAGCGTTACTTCATCTC 1224921
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || ||||| || ||| || || ||||||||||| ||||||||||
Sbjct 1224920 CCACGTCCTCGCATTCTTCGCTGCATCCGATGGAATTGTCAACGAGAACTTGGTCGAGCG 1224861
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | ||||| ||| | | ||||| || ||||||||||| || || ||| ||
Sbjct 1224860 CTTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGATTCCAAATCATGAT 1224801
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || || ||||||||||| |||
Sbjct 1224800 GGAGAATATCCACTCCGAGACATACTCCCTTCTCATCGACACATAC 1224755
Score = 123 bits (136), Expect = 3e-23
Identities = 269/395 (68%), Gaps = 6/395 (2%)
Strand=Plus/Minus
Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097
|| || || || ||||| ||||||||||| ||||||| || ||||| ||||
Sbjct 1224583 CGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATC 1224524
Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157
|| ||| | ||||| || || || ||| | || || || ||| ||| || ||||||||
Sbjct 1224523 TTCTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTCT 1224464
Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217
| ||||||||||| || ||||||||| || | || ||| || ||| ||| ||
Sbjct 1224463 CGTGACGAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTCTCACTTGAAGCACCGC 1224404
Query 117218 CCGAGCGCGGCGCGC-GTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTT 117276
|| ||| || || ||| || || | ||||| || |||| || ||||| ||
Sbjct 1224403 CCAAGC-AAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGCAAGAGTT 1224345
Query 117277 CCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAA 117334
| | || || || || || |||| || || || | || | |||| | |||| ||||
Sbjct 1224344 CTTGACTGAGGCTCTTCCTTGTGC-ACTCCTTGGCATGAACT-CGAATCTGATGAAGCAA 1224287
Query 117335 TACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394
||||||||||||||||| || | ||||| || | || | | | ||| ||||||
Sbjct 1224286 TACATCGAGTTCGTCGCTGATCGTCTGCTTCTTGCCCTCGGCAATGAGAAGGTCTACAAG 1224227
Query 117395 ACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429
| ||||||| | ||||||||| | ||||||
Sbjct 1224226 TCTGCCAACCCATTTGACTTTATGGAGAACATCTC 1224192
Score = 113 bits (124), Expect = 5e-20
Identities = 143/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || || || ||||| |||||||| | || |||||| | |||| | | |
Sbjct 716560 TCGTCAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 716501
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| | ||| || |||| ||||| || ||||| ||| | ||||| ||||| |||
Sbjct 716500 ACAACG-TGAAGTCGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAACAACGTCTC 716442
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| || || || || | || || ||| |||||| ||||||||||||
Sbjct 716441 ATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAG 716382
Query 40879 GAGGCCACGCTGCA 40892
||| |||| || ||
Sbjct 716381 GAGTCCACCCTTCA 716368
>seq16
Length=1327714
Score = 111 bits (122), Expect = 2e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| || ||||| |||| || || | |||| | | |
Sbjct 332297 TTCGTCAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATC 332238
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| ||||| | ||||| || || || || | ||||| ||||| ||
Sbjct 332237 GACAATGTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTG 332178
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| || || || || | ||||| ||| ||| |||||||||||||||
Sbjct 332177 ATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAG 332118
Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904
||| | || || ||||| || ||||
Sbjct 332117 GAGTCGACTCTTCATCTCGTCCTGCG 332092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218742742960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |