Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 156 4e-33 seq16 111 2e-19 >seq4 Length=1888314 Score = 156 bits (172), Expect = 4e-33 Identities = 208/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||||||||| |||||||||| ||| ||| | || || Sbjct 1225039 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATCTA 1224980 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAA 116751 || ||||| | | | ||||||| | | | || ||| ||||||| | |||||| Sbjct 1224979 TCGAAGGATCTCCA-CGACTGGAACAACAAGCTCAATGACGACGAGCGTTACTTCATCTC 1224921 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || ||||| || ||| || || ||||||||||| |||||||||| Sbjct 1224920 CCACGTCCTCGCATTCTTCGCTGCATCCGATGGAATTGTCAACGAGAACTTGGTCGAGCG 1224861 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | | ||||| || ||||||||||| || || ||| || Sbjct 1224860 CTTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGATTCCAAATCATGAT 1224801 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||||||||||| ||| Sbjct 1224800 GGAGAATATCCACTCCGAGACATACTCCCTTCTCATCGACACATAC 1224755 Score = 123 bits (136), Expect = 3e-23 Identities = 269/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 || || || || ||||| ||||||||||| ||||||| || ||||| |||| Sbjct 1224583 CGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATC 1224524 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||| | ||||| || || || ||| | || || || ||| ||| || |||||||| Sbjct 1224523 TTCTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTCT 1224464 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217 | ||||||||||| || ||||||||| || | || ||| || ||| ||| || Sbjct 1224463 CGTGACGAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTCTCACTTGAAGCACCGC 1224404 Query 117218 CCGAGCGCGGCGCGC-GTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTT 117276 || ||| || || ||| || || | ||||| || |||| || ||||| || Sbjct 1224403 CCAAGC-AAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGCAAGAGTT 1224345 Query 117277 CCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAA 117334 | | || || || || || |||| || || || | || | |||| | |||| |||| Sbjct 1224344 CTTGACTGAGGCTCTTCCTTGTGC-ACTCCTTGGCATGAACT-CGAATCTGATGAAGCAA 1224287 Query 117335 TACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394 ||||||||||||||||| || | ||||| || | || | | | ||| |||||| Sbjct 1224286 TACATCGAGTTCGTCGCTGATCGTCTGCTTCTTGCCCTCGGCAATGAGAAGGTCTACAAG 1224227 Query 117395 ACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 | ||||||| | ||||||||| | |||||| Sbjct 1224226 TCTGCCAACCCATTTGACTTTATGGAGAACATCTC 1224192 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| |||||||| | || |||||| | |||| | | | Sbjct 716560 TCGTCAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 716501 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | ||| || |||| ||||| || ||||| ||| | ||||| ||||| ||| Sbjct 716500 ACAACG-TGAAGTCGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAACAACGTCTC 716442 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| || || || || | || || ||| |||||| |||||||||||| Sbjct 716441 ATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAG 716382 Query 40879 GAGGCCACGCTGCA 40892 ||| |||| || || Sbjct 716381 GAGTCCACCCTTCA 716368 >seq16 Length=1327714 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| || ||||| |||| || || | |||| | | | Sbjct 332297 TTCGTCAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATC 332238 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| ||||| | ||||| || || || || | ||||| ||||| || Sbjct 332237 GACAATGTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTG 332178 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| || || || || | ||||| ||| ||| ||||||||||||||| Sbjct 332177 ATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAG 332118 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| | || || ||||| || |||| Sbjct 332117 GAGTCGACTCTTCATCTCGTCCTGCG 332092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218742742960