Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq16 91.5 1e-13 >seq4 Length=1888314 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || ||||| ||||| ||||||||||| |||| || ||| |||||| Sbjct 715906 ACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCC 715965 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || ||||| |||| | |||||||| ||||| || || |||||||||||| Sbjct 715966 AATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGG 716025 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||||| ||| || || | || | || || Sbjct 716026 ATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTT 716085 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || ||||| || ||||| Sbjct 716086 CCGGTCAAAGTCTTGACAAAGATTTGCAT 716114 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| ||||||||||||||||| || |||||| || || Sbjct 716134 ACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCA 716193 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || |||||| |||| || | |||||| ||||| || ||||||||||| || | Sbjct 716194 AGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGA 716253 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| || ||||| | || | || || Sbjct 716254 ATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTTT 716313 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || ||||| |||||||| Sbjct 716314 CCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || |||||||| ||||| | ||||| ||||| ||||| Sbjct 716652 TGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGTGCGACCGTCCTCAAGCTGC 716711 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||||||| |||| | || || || ||||| || || |||||||||||| ||| || Sbjct 716712 TTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGAATCTTG 716771 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||| |||| | ||| ||||| | || | || || ||||| Sbjct 716772 CTCTTGACGTTATCGATGGTATCCGAGGACTCAACCTCAAGAGTGATGGTCTTTCCGGT 716830 >seq16 Length=1327714 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||||||| | |||||| ||||||||| || || ||| Sbjct 332110 GTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCGAGTTGCTTGCCA 332169 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || || || || ||||| || || || ||||||||| ||||| || Sbjct 332170 GCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGGATTTTGGACTTG 332229 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||| ||||||| || | || ||||| || || || Sbjct 332230 ACATTGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGATAGTCTTGCCCGTGAGGGTC 332289 Query 118722 TTTACAAA 118729 || || || Sbjct 332290 TTGACGAA 332297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830024601132