Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 116 4e-21 seq37 87.8 2e-12 >seq4 Length=1888314 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | |||||||| | || |||||||||||| |||||||| | | Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || |||| || || |||||||||||||| || |||| ||||||||||| || Sbjct 716176 AAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGG 716235 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||| ||| ||| | || | |||| | | | ||||| ||||| || Sbjct 716236 ATGCCCTCCTTATCC-TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAAC 716294 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || || || || | ||||| |||||||| ||||| Sbjct 716295 CTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 Score = 109 bits (120), Expect = 6e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 ||||||| || || | | ||| | |||||||| | || ||||||||| || |||| Sbjct 715880 CCTATTGCCCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGT 715939 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 ||||| ||| || ||| | || || | ||||||||||| || || | ||||||||||| Sbjct 715940 AATCACTCAGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGT 715999 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 43128 ||| || | | ||||||||| ||| || |||| | | | ||||| | Sbjct 716000 CGGGTGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAG 716059 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || | || ||||| || || || | ||||| |||||||||||||| Sbjct 716060 ACTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114 >seq37 Length=479966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || | || || || || || || ||||||| ||| || Sbjct 404104 CTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGCAAA 404163 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || |||| ||||||||||| || | | |||||| ||| ||| | || | |||| || Sbjct 404164 AATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCC-TGAATCTTGGACTTGA-CG 404221 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| ||||| || || | ||||| || || || || | ||||| Sbjct 404222 TTGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTTA 404281 Query 43170 ACAAAGATTTGCAT 43183 |||||||||||||| Sbjct 404282 ACAAAGATTTGCAT 404295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817092511880