Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq42 251 6e-62
seq4 116 3e-21
seq16 91.5 1e-13
>seq42
Length=298824
Score = 251 bits (278), Expect = 6e-62
Identities = 574/850 (68%), Gaps = 13/850 (2%)
Strand=Plus/Plus
Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087
|| |||| ||||| ||||| ||||| ||| | |||||| ||||| || || || |
Sbjct 242486 AGCCAAG-TTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGCAGA 242544
Query 23088 GATTGCTACACTTT--ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145
| || | | ||| || || || | ||| |||||||||| |||| ||||| | |||
Sbjct 242545 GGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATC 242602
Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205
|||||| |||||| | || |||| |||||| ||| | ||| | ||| | ||| |
Sbjct 242603 CTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAG 242662
Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACG 23264
| || || | | ||| || ||| ||||| ||| |||| | ||| | |
Sbjct 242663 CTTTTGCGCCTTGATG-GTCTTGCGACCCTTACCTTCGCGCTCATACTGCTCGTAGAGAG 242721
Query 23265 CGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323
| || ||||| | || || ||| || |||| ||| || | | | || ||||| | |
Sbjct 242722 CCTCGAATTCATCGCCATAGACA-TCAGCCAAGCCTGGGCACTCATTGGGGCACATCAAA 242780
Query 23324 CTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
||||| | | | || |||||||| || |||| |||||||| || ||||| || ||||
Sbjct 242781 GTCCAC-TCGCCATTC-TTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGT 242838
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||| || || || || || |||||||| |||||| |||||| | ||| | | |
Sbjct 242839 AGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAAGGTACT 242898
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || || || || ||||| ||||| || || | || || || || |||| ||| || |
Sbjct 242899 CGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTGGTCGCTTGTTAC 242958
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
| || || || |||||||| || ||||||||| | |||| ||||| || |||| ||||
Sbjct 242959 CACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGCCGT 243018
Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621
| || || | || || | | || | || || | ||||||| ||
Sbjct 243019 TCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGATTCGATGAACGTTGA 243078
Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681
|| || || || | || || ||||| ||||| |||| ||||||||||| |
Sbjct 243079 GGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGATAC 243138
Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741
| ||||| |||||||| || | |||| | |||||| ||||| | ||| |||| || |
Sbjct 243139 CGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTGGGCTTGTGGAG 243198
Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801
|| | || | ||| || || ||| || ||||| ||| | | ||||| |||||||
Sbjct 243199 TACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTCTGGGACATCAGATTGT 243258
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
| || || || || || || || || || ||||| || |||| || || ||||| ||||
Sbjct 243259 ATGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCTACTCGCATAATCA 243318
Query 23862 TGTATTGAGG 23871
||| ||| ||
Sbjct 243319 TGTGTTGTGG 243328
>seq4
Length=1888314
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||| |||| || || || ||||| | || |||||| | ||
Sbjct 716342 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCG 716283
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||| ||||| ||| | || |||||||||
Sbjct 716282 GACACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAG 716223
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || |||||||| || || | |||||| ||| || ||||| |||
Sbjct 716222 CAGAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAAC 716163
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || |||||||||||| |||| ||| | || | || ||||
Sbjct 716162 ATTCAAAAGGAGTCGACTCTTCATTTGGTTCTTCGTCTCCGAGGTGGTA 716114
Score = 104 bits (114), Expect = 2e-17
Identities = 292/442 (66%), Gaps = 10/442 (2%)
Strand=Plus/Minus
Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038
|||| |||||||||||||| ||||| ||||| || ||| ||| | || || |||
Sbjct 1224576 TCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCTGGT 1224517
Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098
||||||| || || || ||| | || || || || ||| || | || || || ||||
Sbjct 1224516 TGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTCTCGTGACG 1224457
Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGAC 58156
|||||||||| || || ||||| ||||| | | ||||||| ||| || | || |
Sbjct 1224456 AGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTCTCAC-TTG--AAGCACCGCCCAA 1224400
Query 58157 GCGGGATCGC-ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215
|| | || || ||| | || ||||| || |||| ||| || | ||||| | |
Sbjct 1224399 GCAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGCAAGAGTTCTTGA 1224340
Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275
| || || || || || | || || |||||| || ||||| | ||||| |
Sbjct 1224339 CTGAGGCTCTTCCTTGTGCACTCCTTGGCATGAACTCGAATCTGATGAAGCAATACATCG 1224280
Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAA 58333
|||| || || || | || | || | || | |||| ||| ||||| |
Sbjct 1224279 AGTTCGTCGCTGATCGTCTGCTTCTTGCCCTCGGCAATGAGAAGGTC--TACAAGTCTGC 1224222
Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393
|| || ||||| |||||| | |||||||||| |||||||| ||||| || || ||
Sbjct 1224221 CAACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGGCAAGACTAACTTCTTTGAGAA 1224162
Query 58394 aaaaGTTAGCGAATATCAAAAA 58415
||| | || || ||||||
Sbjct 1224161 GCGCGTTGGTGACTACCAAAAA 1224140
Score = 104 bits (114), Expect = 2e-17
Identities = 199/293 (68%), Gaps = 3/293 (1%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || || || ||||||| |||||| | || ||
Sbjct 1225039 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATCTA 1224980
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| |||||||| ||| ||| | | ||||| || ||| | | || ||
Sbjct 1224979 TCGAAGGATCTCCACGACTGGAACAACAAGCTCAATGACGACGAGCGTTACTTCATCTCC 1224920
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| ||||||||||| ||||| |||||||| |||||||| |
Sbjct 1224919 CACGTCCTCGCATTCTTCGCTGCATCCGATGGAATTGTCAACGAGAACTTGGTCGAGCGC 1224860
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || || | | ||||| | ||||| |||||||| ||| | ||
Sbjct 1224859 TTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGATTCCAAATCATGATG 1224800
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| || | || || || | || || || |||||||| || ||| | |||||
Sbjct 1224799 GAGAATATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATCAAGGA 1224747
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || |||||| |||| || || || || || | || || || | ||
Sbjct 716114 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAGTCTTCG 716055
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || |||||||| || | || |||||||||
Sbjct 716054 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCCGACCAG 715995
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || || ||||| || || ||||| || || |||| ||||| |||
Sbjct 715994 CAGCGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGGCGTACACTGAGTGATTACAAC 715935
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| ||||| || |||||||| ||| |||| ||
Sbjct 715934 ATCCAAAAGGAGTCGACTCTCCATTTGGTTCT 715903
>seq16
Length=1327714
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261
||||| ||||| || || ||||| || ||||| |||| || || | ||||| | ||
Sbjct 332297 TTCGTCAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATC 332238
Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321
|| | ||||| | ||| ||||||||||| | || |||||||| || || ||
Sbjct 332237 GACAATGTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTG 332178
Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381
|| ||||||||||| || | || || ||| | |||||| ||||| || ||
Sbjct 332177 ATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAG 332118
Query 31382 GAATCGACTCTTCATCTGGTACT 31404
|| |||||||||||||| || ||
Sbjct 332117 GAGTCGACTCTTCATCTCGTCCT 332095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766004382320
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