Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq42 251 6e-62 seq4 116 3e-21 seq16 91.5 1e-13 >seq42 Length=298824 Score = 251 bits (278), Expect = 6e-62 Identities = 574/850 (68%), Gaps = 13/850 (2%) Strand=Plus/Plus Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 || |||| ||||| ||||| ||||| ||| | |||||| ||||| || || || | Sbjct 242486 AGCCAAG-TTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGCAGA 242544 Query 23088 GATTGCTACACTTT--ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145 | || | | ||| || || || | ||| |||||||||| |||| ||||| | ||| Sbjct 242545 GGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATC 242602 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 |||||| |||||| | || |||| |||||| ||| | ||| | ||| | ||| | Sbjct 242603 CTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAG 242662 Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACG 23264 | || || | | ||| || ||| ||||| ||| |||| | ||| | | Sbjct 242663 CTTTTGCGCCTTGATG-GTCTTGCGACCCTTACCTTCGCGCTCATACTGCTCGTAGAGAG 242721 Query 23265 CGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 | || ||||| | || || ||| || |||| ||| || | | | || ||||| | | Sbjct 242722 CCTCGAATTCATCGCCATAGACA-TCAGCCAAGCCTGGGCACTCATTGGGGCACATCAAA 242780 Query 23324 CTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 ||||| | | | || |||||||| || |||| |||||||| || ||||| || |||| Sbjct 242781 GTCCAC-TCGCCATTC-TTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGT 242838 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| || || || || || |||||||| |||||| |||||| | ||| | | | Sbjct 242839 AGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAAGGTACT 242898 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || || || || ||||| ||||| || || | || || || || |||| ||| || | Sbjct 242899 CGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTGGTCGCTTGTTAC 242958 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | || || || |||||||| || ||||||||| | |||| ||||| || |||| |||| Sbjct 242959 CACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGCCGT 243018 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 | || || | || || | | || | || || | ||||||| || Sbjct 243019 TCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGATTCGATGAACGTTGA 243078 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 || || || || | || || ||||| ||||| |||| ||||||||||| | Sbjct 243079 GGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGATAC 243138 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 | ||||| |||||||| || | |||| | |||||| ||||| | ||| |||| || | Sbjct 243139 CGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTGGGCTTGTGGAG 243198 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 || | || | ||| || || ||| || ||||| ||| | | ||||| ||||||| Sbjct 243199 TACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTCTGGGACATCAGATTGT 243258 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || || || || || || || || || ||||| || |||| || || ||||| |||| Sbjct 243259 ATGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCTACTCGCATAATCA 243318 Query 23862 TGTATTGAGG 23871 ||| ||| || Sbjct 243319 TGTGTTGTGG 243328 >seq4 Length=1888314 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| || || || ||||| | || |||||| | || Sbjct 716342 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCG 716283 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || ||||||||| Sbjct 716282 GACACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAG 716223 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| || || | |||||| ||| || ||||| ||| Sbjct 716222 CAGAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAAC 716163 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || |||||||||||| |||| ||| | || | || |||| Sbjct 716162 ATTCAAAAGGAGTCGACTCTTCATTTGGTTCTTCGTCTCCGAGGTGGTA 716114 Score = 104 bits (114), Expect = 2e-17 Identities = 292/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| |||||||||||||| ||||| ||||| || ||| ||| | || || ||| Sbjct 1224576 TCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCTGGT 1224517 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| || || || ||| | || || || || ||| || | || || || |||| Sbjct 1224516 TGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTCTCGTGACG 1224457 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGAC 58156 |||||||||| || || ||||| ||||| | | ||||||| ||| || | || | Sbjct 1224456 AGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTCTCAC-TTG--AAGCACCGCCCAA 1224400 Query 58157 GCGGGATCGC-ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 || | || || ||| | || ||||| || |||| ||| || | ||||| | | Sbjct 1224399 GCAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGCAAGAGTTCTTGA 1224340 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 | || || || || || | || || |||||| || ||||| | ||||| | Sbjct 1224339 CTGAGGCTCTTCCTTGTGCACTCCTTGGCATGAACTCGAATCTGATGAAGCAATACATCG 1224280 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAA 58333 |||| || || || | || | || | || | |||| ||| ||||| | Sbjct 1224279 AGTTCGTCGCTGATCGTCTGCTTCTTGCCCTCGGCAATGAGAAGGTC--TACAAGTCTGC 1224222 Query 58334 AAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393 || || ||||| |||||| | |||||||||| |||||||| ||||| || || || Sbjct 1224221 CAACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGGCAAGACTAACTTCTTTGAGAA 1224162 Query 58394 aaaaGTTAGCGAATATCAAAAA 58415 ||| | || || |||||| Sbjct 1224161 GCGCGTTGGTGACTACCAAAAA 1224140 Score = 104 bits (114), Expect = 2e-17 Identities = 199/293 (68%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| |||||| | || || Sbjct 1225039 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATCTA 1224980 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | ||||| || ||| | | || || Sbjct 1224979 TCGAAGGATCTCCACGACTGGAACAACAAGCTCAATGACGACGAGCGTTACTTCATCTCC 1224920 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| ||||||||||| ||||| |||||||| |||||||| | Sbjct 1224919 CACGTCCTCGCATTCTTCGCTGCATCCGATGGAATTGTCAACGAGAACTTGGTCGAGCGC 1224860 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || | | ||||| | ||||| |||||||| ||| | || Sbjct 1224859 TTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGATTCCAAATCATGATG 1224800 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || | || || || | || || || |||||||| || ||| | ||||| Sbjct 1224799 GAGAATATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATCAAGGA 1224747 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| || || || || || | || || || | || Sbjct 716114 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAGTCTTCG 716055 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || |||||||| || | || ||||||||| Sbjct 716054 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCCGACCAG 715995 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || || ||||| || || |||| ||||| ||| Sbjct 715994 CAGCGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGGCGTACACTGAGTGATTACAAC 715935 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || |||||||| ||| |||| || Sbjct 715934 ATCCAAAAGGAGTCGACTCTCCATTTGGTTCT 715903 >seq16 Length=1327714 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || ||||| |||| || || | ||||| | || Sbjct 332297 TTCGTCAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATC 332238 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | ||| ||||||||||| | || |||||||| || || || Sbjct 332237 GACAATGTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTG 332178 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||||||||| || | || || ||| | |||||| ||||| || || Sbjct 332177 ATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAG 332118 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 || |||||||||||||| || || Sbjct 332117 GAGTCGACTCTTCATCTCGTCCT 332095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766004382320