Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq42 237 2e-57 >seq42 Length=298824 Score = 237 bits (262), Expect = 2e-57 Identities = 1316/2068 (64%), Gaps = 55/2068 (3%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 || || || || ||||| || || | | ||||| ||||||||||| || ||||| ||| Sbjct 241572 GTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTTTTCAGA 241631 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| || || |||||||| || | ||| | ||||| || Sbjct 241632 CCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTGTGGGATCCTTCATG 241691 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || ||||| ||||| ||| || ||| | || || | ||| || ||||||| | | Sbjct 241692 TGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCATTTGGACG 241751 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || |||| |||||||||| || || |||| ||| ||||| |||| | | Sbjct 241752 ATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 241811 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | |||||||| ||||||||||| | || || | ||||| || | ||| | Sbjct 241812 TTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 241871 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | | || | | | | || | ||||| || |||||||| || ||| Sbjct 241872 CAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGACTTGGAACTCGCCA 241931 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | | || | |||| ||| || || ||||| || || | ||||||| || Sbjct 241932 GCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGCACTCATTGAAGCCA 241991 Query 62463 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | ||||||| | | || || |||| |||||||| || || | || ||||| | |||||| Sbjct 241992 AGAATTTGA-CTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACC 242050 Query 62522 GTATGTTC--TGATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAAC 62578 ||||| ||||||| | ||| || ||| |||||| ||| ||||| | || ||| Sbjct 242051 --ATGTTGCTTGATTTTCTGCTTCAAGCTGT-CCCAATCCCAGAGATCTGTTGGAGTAAC 242107 Query 62579 ANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATA 62638 | ||| || | || || ||| || || || |||| ||||| Sbjct 242108 ACCCCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATA 242167 Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAACTC--GCCTCTAATGCACCGTAATAAATGGTT 62696 | || || || || || | ||||| || | ||| | | || ||||| Sbjct 242168 AGTGCCATCAACCTTGGCAAGCT--CAACTGAAGCAGTGAGTGCGGCATGGTAGATGGTC 242225 Query 62697 TCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 || ||||| | | || || | |||| || || || || |||||| | ||||| Sbjct 242226 TCGAAGATTTGAATGTTGAGGTGCTTG-GCCTCTGGAGAGTCGAATGGAAGACG-AAGAG 242283 Query 62756 --AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813 || ||| || || || | || || ||||||| ||||||||| || | || Sbjct 242284 CCAAGAAA-GCATCAGCAAGACCCTGGACACCAACGGCGATAGGTCGGTGGCGGAAGTTG 242342 Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873 | | ||||| |||| ||| ||||| || | ||| || || || || | || || Sbjct 242343 CTTCTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTTG 242402 Query 62874 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCT--ATTACA 62930 |||| |||| | || || | ||| | | || ||| || ||| | | || | Sbjct 242403 ACAACGACTTGGCAGACTTCGTGAAGTCTCTGGAAGTCATAAGTGCCGTTGTTCATGTCG 242462 Query 62931 A-ACATGTTCAATG--CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 | | | || | | ||| || |||| || || ||||| ||||||| | | | Sbjct 242463 ACATAGGTAGGAAGGGCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAG 242522 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTT--GATAGTTCCTAAATTTTGTTGAT 63045 || | | ||||||||||| || || | | ||| ||| || || | ||| | || | Sbjct 242523 TACTCAACAATCTCAGTGCAGAGGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGGT 242580 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 | |||||| |||| || |||||||| ||||| ||||| ||| | ||||| || |||||| Sbjct 242581 TGCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAG 242640 Query 63106 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTC 63163 || | || | | ||||| | | ||||| || | || | | | | ||| Sbjct 242641 CCTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGTC--TTGCGACCCTTACCTTC 242698 Query 63164 TCTTTCGTATAGA--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 | || || | ||| | | | ||||| || || || | |||| |||| | Sbjct 242699 GCGCTCATACTGCTCGTAGAGAGCC--TCGAATTCATCGCCATAGACATCAGCCAAGCCT 242756 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || || |||| || |||||||| | |||||| || | | | ||||| ||||| || Sbjct 242757 GGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAA 242816 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 |||||||||||||| || || || ||||| | | || ||||| || || | Sbjct 242817 AGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGA 242876 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||| |||||| ||| || | | | ||| | ||||| || || | || || || Sbjct 242877 TTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCG 242936 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | | || || || ||||| || || || || | ||| | ||| ||||| || | ||| Sbjct 242937 AAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACT 242996 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| || | || ||||| || ||||||| || || | || ||| |||| | Sbjct 242997 CGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTA 243056 Query 63522 GCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 || || || | || ||| || || ||||| || || | || || || | |||| Sbjct 243057 GCGCGGATTCGATGAACGTTG--AGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGC 243114 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || || ||||| ||||| || || || || || || |||||| | || |||| Sbjct 243115 AAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAAC 243174 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | ||| | |||| | | ||| || ||| || | || || ||||| ||||| | Sbjct 243175 ATGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGA 243234 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63758 | || || | || | |||||||| |||||||| || | || ||||| || | ||| Sbjct 243235 AGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCG-TGA 243293 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || || ||||| || ||||| | |||||| || || | ||| || ||| || | Sbjct 243294 ATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGAGG 243353 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 63876 | | ||| ||| || | ||| || || ||||| || | ||| ||||| |||| Sbjct 243354 CGGAGGAGGTATGATCGCTCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAA--TCTC 243411 Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAAC-TATATCCATG-GT 63934 | ||||| | |||| | ||||| || | ||| | ||| |||| | | ||| | Sbjct 243412 GGTCGTAGACAATAGCGGAATTAAGTTCTGCCTCGTGCTTGATAACACACTTGTATGTGG 243471 Query 63935 AATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63994 | || || || |||||| | || ||||| |||||| || |||||| | | || Sbjct 243472 CCTCGCTG--ATCATAGGAGAAAGCTTGCCATTCCGAGGATTGACGTAGTTGTAGAGGTC 243529 Query 63995 CTCCATCAC-TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTC 64053 ||||| || || | | || || || | |||||| || || || | || |||| Sbjct 243530 TGATATCACAGTCGAGAACT-GCTTCTTGGTCTGCTTGTGGAGGTTGGAGACTGCAATTC 243588 Query 64054 TGGCGGCTAGAATGGCATAATCCGGATG 64081 || || || |||||||| || ||||| Sbjct 243589 GTGCAGCGAGGATGGCATAGTCGGGATG 243616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817041036880