Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq42 86.0 6e-12 >seq42 Length=298824 Score = 86.0 bits (94), Expect = 6e-12 Identities = 376/587 (64%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || ||||| || || || ||||| | || ||| || ||| ||||| || || | | Sbjct 242751 AAGCCTGGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTC 242810 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTT 38084 || || | |||||| | ||| | || ||| || | ||| | || || || || Sbjct 242811 ATGAAAAGATCAGGAATCCACAGGGC-GTAGAAGAGATCACGAGCTCGGACCTCCTCCTT 242869 Query 38085 CCCTACATTCTTTCTTAAGCTTA-GAAAATCGAATATATCAGCGTGCCATGGTTCTATAT 38143 || |||||||| ||| | | | | ||||| | ||| ||||||||||| || | || Sbjct 242870 GCCGTGATTCTTTCG-AAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGAT 242928 Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203 | || | | || ||||||| || | ||| || || | || || | | | ||||| | Sbjct 242929 AGATAGCGAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGT 242988 Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263 | | | || | ||| || || || || || || || || ||| | || | || || | Sbjct 242989 TGAAGACTCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGG 243048 Query 38264 TACCCTTAGCTCGTATATTACTTATCG-ACAATCCTATTCCACCTGCATGTTTTGATATT 38322 || |||| || || | | | || | || |||||||| |||| || || || Sbjct 243049 CTCCGGTAGCGCGGAT-TCGATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATC 243107 Query 38323 AAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGT 38382 | ||||| || || || || | ||||| || |||||||| ||||| || | Sbjct 243108 ATGGCGCAAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACA 243167 Query 38383 ATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCA 38442 | ||||| ||| | ||| | |||||| || || || | || || || ||| Sbjct 243168 AGGAAACATGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCA 243227 Query 38443 TGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCG 38502 || |||| || || | |||| ||| ||||| || || || | || ||||| | Sbjct 243228 TGCGTGAAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCA 243287 Query 38503 CCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| || | | ||| | ||| | ||| |||||||| | ||| Sbjct 243288 CCGTGAATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTC 243334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524384184240