Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq42 201 1e-46 >seq42 Length=298824 Score = 201 bits (222), Expect = 1e-46 Identities = 749/1154 (65%), Gaps = 30/1154 (3%) Strand=Plus/Plus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| || |||| || || ||||| ||||||| | | | || | | |||||| Sbjct 242478 GCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCA 242537 Query 65796 GTGCAAAGATTACTACACTT--GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 65853 ||||| || || | | ||| |||||| || | ||| | || || |||||| |||| | Sbjct 242538 GTGCAGAGGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGC 242595 Query 65854 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 65913 | |||||||| ||||| ||||| ||| | ||||| || |||||| || | || | | Sbjct 242596 AAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGT 242655 Query 65914 TCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTATAGT- 65969 ||||| | | ||||| || | ||| | ||| ||| | || || | Sbjct 242656 ACCAGAGCTTTTGCGCCTTGATGGTC---TTGCGACCCTTACCTTCGCGCTCATACTGCT 242712 Query 65970 -GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 66028 ||| | | | ||||| || || || | |||| |||| || || || |||| || Sbjct 242713 CGTAGAGAGCC--TCGAATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGG 242770 Query 66029 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 66088 |||||||| | |||||| || | | | ||||| ||||| || |||||||||||||| Sbjct 242771 GCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCA 242830 Query 66089 AAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 66148 || || || | ||| | | || ||||| || || ||||||| |||||| Sbjct 242831 CAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATC 242890 Query 66149 GAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 ||| || | | | ||| ||||| || || | || || || | | | || || || Sbjct 242891 AAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTGGTCG 242950 Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268 ||||| || || || || | ||| | ||| ||||| || | |||| | ||| || | Sbjct 242951 CTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGAC 243010 Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 || || || || ||||||| || || | || ||| ||| | || || || | Sbjct 243011 GATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGATTCGATG 243070 Query 66329 AA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 || ||| || || ||||| || || | || || || | ||||| || || || Sbjct 243071 AACGTTG--AGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTG 243128 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 || ||||| || || ||||| || ||| |||||| | || ||||| ||| | |||| Sbjct 243129 TCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTGG 243188 Query 66447 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506 | ||| || ||| || | || || ||||| ||||| || || || | || Sbjct 243189 GCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTCTGGGAC 243248 Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGAC 66565 | |||||||| |||||||| || | || ||||| || | ||||| || ||||| || Sbjct 243249 ATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCG-TGAATGCCGACTGCTAC 243307 Query 66566 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 66625 ||||| | |||||| || || | ||| ||||||| || | | | ||| || Sbjct 243308 TCGCATAATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGAGGCGGAGGAGGTATGA 243367 Query 66626 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 66683 | || | ||| || || ||||| || | ||| ||||| ||||| ||||| | |||| Sbjct 243368 TCGCTCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAA--TCTCGGTCGTAGACAATA 243425 Query 66684 ACCGAGTTGAGTTTATCCTTATATTTGTTAAC-TACATCCATG-GTAATACTTGAAATAA 66741 | || || |||| ||| | ||| |||| || | ||| | | || || | Sbjct 243426 GCGGAATTAAGTTCTGCCTCGTGCTTGATAACACACTTGTATGTGGCCTCGCTG--ATCA 243483 Query 66742 TCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCAC-TTCA 66800 | |||||| | || ||||| ||||||||| |||||| | | || ||||| || Sbjct 243484 TAGGAGAAAGCTTGCCATTCCGAGGATTGACGTAGTTGTAGAGGTCTGATATCACAGTCG 243543 Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 || | | || || || | ||||| || || || || || |||| || || | ||| Sbjct 243544 AGAACT-GCTTCTTGGTCTGCTTGTGGAGGTTGGAGACTGCAATTCGTGCAGCGAGGATG 243602 Query 66861 GCATAATCCGGATG 66874 ||||| || ||||| Sbjct 243603 GCATAGTCGGGATG 243616 Score = 114 bits (126), Expect = 2e-20 Identities = 347/528 (66%), Gaps = 11/528 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 || || || || ||||| || || | | ||||| ||||||||||| || ||||| ||| Sbjct 241572 GTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTTTTCAGA 241631 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || || |||||||| || | ||| | ||||| || Sbjct 241632 CCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTGTGGGATCCTTCATG 241691 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || ||||| ||||| ||| || ||| | || || | ||| || ||||||| | | Sbjct 241692 TGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCATTTGGACG 241751 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || |||| |||||||||| || || |||| ||| ||||| |||| | | Sbjct 241752 ATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 241811 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | |||||||| ||||||||||| || || || | ||||| || | ||| | Sbjct 241812 TTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 241871 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | || | | | | || | || || || ||||| || || ||| Sbjct 241872 CAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGACTTGGAACTCGCCA 241931 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | | || | |||| ||| || || ||||| || || | ||||||| || Sbjct 241932 GCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGCACTCATTGAAGCCA 241991 Query 65256 AAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 | ||||||| | | || | ||||| |||||||| || || | || ||||| | |||||| Sbjct 241992 AGAATTTGA-CTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACC 242050 Query 65315 GTATGTT--CTGATTTTAT-CTTTTAGAGGTTCCCAATTCCAAAGATC 65359 ||||| ||||||| | ||| || | ||||||| ||| ||||| Sbjct 242051 --ATGTTGCTTGATTTTCTGCTTCAAGCTG-TCCCAATCCCAGAGATC 242095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172215871640