Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq42 275 9e-69 seq4 122 1e-22 >seq42 Length=298824 Score = 275 bits (304), Expect = 9e-69 Identities = 1326/2070 (64%), Gaps = 59/2070 (3%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 || || || || ||||| || || | | ||||| ||||||||||| || ||||| ||| Sbjct 241572 GTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTTTTCAGA 241631 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || ||| |||||||| || | ||| | ||||| || Sbjct 241632 CCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTGTGGGATCCTTCATG 241691 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || ||||| ||||| ||| || ||| | || || | ||| || ||||||| | | Sbjct 241692 TGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCATTTGGACG 241751 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || |||| |||||||||| || || |||| ||| ||||| |||| | | Sbjct 241752 ATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 241811 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | |||||||| ||||||||||| || || || | ||||| || | ||| | Sbjct 241812 TTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 241871 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | || | | | | || | || || || ||||| || || ||| Sbjct 241872 CAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGACTTGGAACTCGCCA 241931 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | | || | |||| ||| || || |||||||| || | | ||||| || Sbjct 241932 GCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGCACTCATTGAAGCCA 241991 Query 79135 AAAATTTGAGCAGTTGATGCC-GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | ||||||| | | || || | ||||||||||| || || | || ||||| | |||||| Sbjct 241992 AGAATTTGA-CTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACC 242050 Query 79194 GTATGATCTGATTTTATCTTTTAGAGAT-TCCCAATCCCAAAGATCAGACGGGACAACAT 79252 | | ||||||| | || | || | ||||||||||| ||||| | || |||| Sbjct 242051 ATGTTGCTTGATTTTCTGCTTCA-AGCTGTCCCAATCCCAGAGATCTGTTGGAGTAACAC 242109 Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAG 79312 ||| | |||||| || | || || || || || |||| ||||||| Sbjct 242110 CCCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATAAG 242169 Query 79313 GTCCTTCCTTTTCGGCTAATTCACAACTC--GCCTCTAATGCTCCGTAATAAATGGTTTC 79370 || || | ||| | ||| ||| || | ||| | | || ||||| || Sbjct 242170 TGCCATCAACCTTGGCAAGCTCA--ACTGAAGCAGTGAGTGCGGCATGGTAGATGGTCTC 242227 Query 79371 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG-- 79427 ||| || | | ||||| | |||| || ||| | || |||||| | ||||| Sbjct 242228 GAAGATTTGAATGTTGAGGTGCTTG-GCCTCTGGAGAGTCGAATGGAAGACG-AAGAGCC 242285 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 || ||| || || || | || || ||||||| ||||||||| || | || Sbjct 242286 AAGAAA-GCATCAGCAAGACCCTGGACACCAACGGCGATAGGTCGGTGGCGGAAGTTGCT 242344 Query 79488 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGAC 79547 | | ||||| |||| ||| ||||| || | ||| || || || || | ||| |||| Sbjct 242345 TCTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTTGAC 242404 Query 79548 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATTA 79600 | |||| | || || | ||| | | || ||| | | || ||| | | Sbjct 242405 AACGACTTGGCAGACTTCGTGAAGTCTCTGGAAGTCATAAGTGCCGTTGTTCATGTCG-A 242463 Query 79601 CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 79660 || | | | || | || |||| || || ||||| ||||||| | | | | Sbjct 242464 CATAGGTAGGAAGGGCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGT 242523 Query 79661 ATTGTATTATTTCAGTGCAGAGGTTACTACACTTA--ATGGTTCCTAAATTTTGTTGATT 79718 | | | || |||||||||||||| | | ||| ||||| || | ||| | || || Sbjct 242524 ACTCAACAATCTCAGTGCAGAGGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGGTT 242581 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 |||||| |||| || |||||||| ||||| ||||| ||| | ||||| || |||||| Sbjct 242582 GCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGC 242641 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTT---TTC 79835 || | || | | ||||| | | ||||| || | |||| | ||| ||| Sbjct 242642 CTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGT---CTTGCGACCCTTACCTTC 242698 Query 79836 TCTTTCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 | || || || ||| | | | ||||| || || || | ||||| | || || Sbjct 242699 GCGCTCATACTGCTCGTAGAGAGCC--TCGAATTCATCGCCATAGACATCAGCCAAGCCT 242756 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAA 79951 || || || | || |||||||| | |||||| |||| || ||| ||||| ||||| | Sbjct 242757 GGGCACTCATTGGGGCACATCAAAGTCCACTCGCCAT--TCTTTTCAACTCGCTTCATGA 242814 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 | |||||||||||||| || || || ||||| | | || |||||| || || Sbjct 242815 AAAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGT 242874 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 ||||||| |||||| ||| || | | | ||| | ||||| || || | || || | Sbjct 242875 GATTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAG 242934 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | | || ||||| ||||| || || || || | ||| | ||| ||||| || | | Sbjct 242935 CGAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGA 242994 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 ||| | ||| || | || || || || ||||||| || || | || ||| ||| Sbjct 242995 CTCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGG 243054 Query 80192 TGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 | || || || | || ||| || || ||||| || || | || || || | || Sbjct 243055 TAGCGCGGATTCGATGAACGTTG--AGGCCAATTCCACCAGCATTCTTGGAAATCATGGC 243112 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| || || || || ||||| || || || || || || |||||| | || || Sbjct 243113 GCAAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAA 243172 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 ||| ||| | |||| | ||| || ||| || | || || ||||| ||||| Sbjct 243173 ACATGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGT 243232 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGAT 80428 || || || | |||| |||||||| |||||||| || | || ||||| || | | Sbjct 243233 GAAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCG-T 243291 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 |||| || || || || ||||| | |||||| || || | ||| ||||||| ||| | Sbjct 243292 GAATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGA 243351 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 80546 | | ||| ||| || | ||| || || ||||| || | ||| ||||| || Sbjct 243352 GGCGGAGGAGGTATGATCGCTCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAA--TC 243409 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC-TACATCCATGG 80605 ||| ||||| | |||| | || || |||| ||| | ||| |||| || | || | Sbjct 243410 TCGGTCGTAGACAATAGCGGAATTAAGTTCTGCCTCGTGCTTGATAACACACTTGTAT-G 243468 Query 80606 TGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 80664 || || | || || |||||| | || ||||| |||||| || |||||| | | Sbjct 243469 TG-GCCTCGCTGATCATAGGAGAAAGCTTGCCATTCCGAGGATTGACGTAGTTGTAGAGG 243527 Query 80665 TCCTCCATCAC-TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 80723 || ||||| || || | | || || || | |||||| || || || || || || Sbjct 243528 TCTGATATCACAGTCGAGAACT-GCTTCTTGGTCTGCTTGTGGAGGTTGGAGACTGCAAT 243586 Query 80724 TCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || || || | |||||||| || ||||| Sbjct 243587 TCGTGCAGCGAGGATGGCATAGTCGGGATG 243616 >seq4 Length=1888314 Score = 122 bits (134), Expect = 1e-22 Identities = 335/513 (65%), Gaps = 3/513 (1%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||||||||| ||||| || || || || || || ||||| || || | | || || || Sbjct 1224140 TTTTTGGTAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTT 1224199 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| || ||||| || |||| | || || | || | | || | || || Sbjct 1224200 CTCCATAAAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTGCCGAGGGCAAGAAG 1224259 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || | ||| ||||| || || || ||| ||||||| | | ||||| || | || Sbjct 1224260 CAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAGGAG 1224319 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 1224320 TGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAATGAC 1224379 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | || | || | || || | ||| || || || | | || || || Sbjct 1224380 GTCTTGGACAGCTTGCTTGCTTGGGCGGTGCTTCAAGTGAGAGAAGAGAAGGCAAGCAAA 1224439 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 ||| ||| ||||||||||| | | || ||||| ||||| || || || || | ||| Sbjct 1224440 GTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGCCAT 1224499 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 || |||||||| || | ||| || |||||||| || || ||| |||||||| || || Sbjct 1224500 AAGACCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCACTGAAGAAGATACCCTC 1224559 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACTT 50144 || ||||| || || || || | | || | | | | |||| || |||||||| Sbjct 1224560 GACGGCGGCGAATGCGACGAGACGTTGAGCAAATGTAGAGTTCTTGTCTTGAATCCACTT 1224619 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 |||||| ||||||||||| || | ||| || Sbjct 1224620 GACAGCCCAGTCGGCCTTCTTCTTGATACATGG 1224652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268162536440