Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq42 264 2e-65 >seq42 Length=298824 Score = 264 bits (292), Expect = 2e-65 Identities = 1330/2082 (64%), Gaps = 57/2082 (3%) Strand=Plus/Plus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||| | ||| | |||||||| || |||| || || || | ||||| ||||||||||| Sbjct 241559 TTCTTGGTCGACAGTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACAT 241618 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGC 70906 ||| ||||| ||||| | |||| || || |||||||| || | ||| || | Sbjct 241619 GCCAGTTTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTG- 241677 Query 70907 TAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTG 70966 | ||||| |||||||| |||||||| || ||| || ||| | || || | ||| | Sbjct 241678 TGGGATCCTTCATGTGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAG 241737 Query 70967 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAA 71026 | ||||||| | ||| || |||| |||||||||| || || |||| ||| | Sbjct 241738 CGGCCATTTGGACGATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGA 241797 Query 71027 TATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTT 71083 |||| |||| | ||| | | |||||||| ||||||||||| ||||| || | || | Sbjct 241798 TATCAGCTGGGATGTTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCT 241857 Query 71084 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | || | ||| ||| | | || | | | | || | || || || | Sbjct 241858 TCATGTTGTCAGACCAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGA 241917 Query 71144 CTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 |||| || || |||| | || | ||||| ||| || || ||||| || || | Sbjct 241918 CTTGGAACTCGCCAGCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGC 241977 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||| || | ||||||| | | || | ||||| |||||||| || || | | Sbjct 241978 ACTCATTGAAGCCAAGAATTTGA-CTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAG 242036 Query 71263 CTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGAT-TCCCAATTCCAAAGATC 71321 ||||| | |||||||||| |||||| | || | || | ||||||| ||| ||||| Sbjct 242037 CTATTGCGAAGACCATGTTGCTTGATTTTCTGCTTCA-AGCTGTCCCAATCCCAGAGATC 242095 Query 71322 CGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGC 71381 | ||| ||| ||| || || || || | Sbjct 242096 TGTTGGAGTAACACCCCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAGAACCCTC 242155 Query 71382 ATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACT--CGCCTCTAATGCTCCA 71439 | |||| || || | || || | ||| || | ||||| || | ||| || Sbjct 242156 AAATGTCTCATAAGTGCCATCAACCTTGGCAAG--CTCAACTGAAGCAGTGAGTGCGGCA 242213 Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGG 71498 | || ||||| ||||| || | | ||||| | |||| || || || || ||||| Sbjct 242214 TGGTAGATGGTCTCGAAGATTTGAATGTTGAGGTGCTTG-GCCTCTGGAGAGTCGAATGG 242272 Query 71499 ATAATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 | | ||||| || ||| || || || | || || || |||| ||||||||| | Sbjct 242273 A-AGACGAAGAGCCAAGAAA-GCATCAGCAAGACCCTGGACACCAACGGCGATAGGTCGG 242330 Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616 || | || | | ||||| |||| ||| ||||| || | ||| || || || Sbjct 242331 TGGCGGAAGTTGCTTCTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATCTTG 242390 Query 71617 TTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC- 71675 || | || |||| | |||| | || || | ||| | | || ||| | | || Sbjct 242391 TTCAAGTTCTTGACAACGACTTGGCAGACTTCGTGAAGTCTCTGGAAGTCATAAGTGCCG 242450 Query 71676 ---ATCTATTACAAACACGT-TCAAG-GCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 || | | | | || ||| |||| || |||| || || ||||| |||||| Sbjct 242451 TTGTTCATGTCGACATAGGTAGGAAGGGCAAGTGAAGCCAAGTTGCAGACGGCAACCTCA 242510 Query 71731 TTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTT--GATGGTTCCTA 71788 | | | | || | | ||| |||||||| || || | | ||| |||||| || | Sbjct 242511 TCTGGAGCACAGTACTCAACAATCTCAGTGCAGAGGTT-CGA-GCTTCGGATGGTACCGA 242568 Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848 ||| | || || |||||| |||| || |||||||| ||||| || || ||| | |||| Sbjct 242569 GATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAG 242628 Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT 71908 | || |||||| || | || | | ||||| | | |||| | || ||||| Sbjct 242629 TCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGCTTTTGCGCCT---TGATGGTCTTGC 242685 Query 71909 ATCTCTT---TTCTCTTTCGTATTG--TGTATATAATCGTTCGAACTCGTCTCCCCAAGC 71963 | ||| ||| | || || || ||| | | | ||||| || || || | | Sbjct 242686 GACCCTTACCTTCGCGCTCATACTGCTCGTAGAGAGCC--TCGAATTCATCGCCATAGAC 242743 Query 71964 ATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT-- 72021 || | || || || || ||||| || |||||||| | |||||| |||| || ||| Sbjct 242744 ATCAGCCAAGCCTGGGCACTCATTGGGGCACATCAAAGTCCACTCGCCAT--TCTTTTCA 242801 Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| || |||||||||||||| || || || ||||| | | || | Sbjct 242802 ACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACC 242861 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || ||||||| |||||| ||| || | | | ||| | ||||| || Sbjct 242862 TCCTCCTTGCCGTGATTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGC 242921 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | || || || | | | || || || ||||| || || || || | ||| | ||| Sbjct 242922 TCAAGATAGATAGCGAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCA 242981 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||||| || | |||| | ||| || | || || || || |||||| || || | Sbjct 242982 GTGTTGTTGAAGACTCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCA 243041 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTT 72320 || ||| ||| | || || || | | | | | | || || ||||| || || | || Sbjct 243042 ATGTAGGCTCCGGTAGCGCGGAT-TCGATGAACGTTGAGGCCAATTCCACCAGCATTCTT 243100 Query 72321 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 || || | ||||| || || || || ||||| || || ||||| || ||| |||| Sbjct 243101 GGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCAT 243160 Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 72440 || | || ||||| ||| | |||| | ||| || ||| || | || || Sbjct 243161 GTCGACAAGGAAACATGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGG 243220 Query 72441 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 72500 ||||| ||||| || || || | |||| |||||||| |||||||| || | || || Sbjct 243221 GGAAGCATGCGTGAAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGAT 243280 Query 72501 ATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGA 72559 ||| || | || || || || || || ||||| | ||| || || || | ||| || Sbjct 243281 ATCTTCACCG-TGAATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCGCAGA 243339 Query 72560 TCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 72619 ||||| ||| | | | ||| ||| || | ||| || || ||||| || | || Sbjct 243340 TCTTGCCATTGAGGCGGAGGAGGTATGATCGCTCGAGAGTCTTGAAGCCAAAGTATTGGT 243399 Query 72620 A--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAAC 72677 | ||||| ||||| ||||| | |||| | ||||| |||| ||| | ||| |||| Sbjct 243400 AATTGAAA--TCTCGGTCGTAGACAATAGCGGAATTAAGTTCTGCCTCGTGCTTGATAAC 243457 Query 72678 -TATATCCATGGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 72735 | | || ||| || | || || |||||| | || ||||| |||||| || Sbjct 243458 ACACTTGTAT-GTG-GCCTCGCTGATCATAGGAGAAAGCTTGCCATTCCGAGGATTGACG 243515 Query 72736 TAGTTGAATAAATCCTCCATCAC-TTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 72794 |||||| | | || ||||| || || | | || || || | |||||| || || Sbjct 243516 TAGTTGTAGAGGTCTGATATCACAGTCGAGAACT-GCTTCTTGGTCTGCTTGTGGAGGTT 243574 Query 72795 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || || |||| || || || |||||||| || ||||| Sbjct 243575 GGAGACTGCAATTCGTGCAGCGAGGATGGCATAGTCGGGATG 243616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138604363960