Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4 102 8e-17 >seq4 Length=1888314 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | ||| ||||| | || || || ||||| ||||||||||| Sbjct 715885 TGCCCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCA 715944 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 |||| ||| | | || || | ||| ||||||||| |||||| || ||||| ||||| Sbjct 715945 CTCAGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGT 716004 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || || || ||||| || || || | | || | ||||||| | || Sbjct 716005 GGGATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCC 716064 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || | ||||| |||||||| || || || || ||||||||| Sbjct 716065 ACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATA 716115 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | ||| ||||||| || || || ||||| ||||||||||| | Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| |||||||| |||| || | ||||| ||||| || Sbjct 716176 AAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGG 716235 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||| || || | | || | ||||||| | ||| || Sbjct 716236 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACC 716295 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||| || ||||| || || || || || |||||| || Sbjct 716296 TCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCATACCT 716346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013950024720