Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 107 3e-18 >seq4 Length=1888314 Score = 107 bits (118), Expect = 3e-18 Identities = 198/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | ||||||| | ||||| Sbjct 1225039 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATCTA 1224980 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | | | ||| ||||| | || || || Sbjct 1224979 TCGAAGGATCTCCACGACTGGAACAACAAGCTCAATGACGACGAGCGTTACTTCATCTCC 1224920 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| || | ||||||||||| |||||||| || || | || Sbjct 1224919 CACGTCCTCGCATTCTTCGCTGCATCCGATGGAATTGTCAACGAGAACTTGGTCGAGCGC 1224860 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGAT 125257 ||| | ||| | || || |||| |||| |||| |||||||||||||||||||| Sbjct 1224859 TTCAGTGGTGAGGTCCAGATCCCTGAGGC-TCGTTGCTTCTACGGATTCCAAATCATGAT 1224801 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||||| | ||||| || | ||||| || || |||| ||||| Sbjct 1224800 GGAGAATATCCACTCCGAGACATACTCCCTTCTCATCGACACATACAT 1224753 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || |||||||||||||| ||||| |||||||| ||| || ||| ||||||| Sbjct 1224580 CTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTC 1224521 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | |||||||| || || ||| | || || || | || || | || ||||| Sbjct 1224520 TGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTCTCGT 1224461 Query 125547 GACGAGGGCCTACACTGTGACTTTGC 125572 |||||||| || ||| |||||||| Sbjct 1224460 GACGAGGGTCTCCACACCGACTTTGC 1224435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058542309960