Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4 105 5e-18 seq16 100 2e-16 >seq4 Length=1888314 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || ||||| ||||||||||| || || | | | | || || Sbjct 715905 AACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTC 715964 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| || ||||| | ||||| || || |||||| ||| || || || ||||| Sbjct 715965 CAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTG 716024 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||| || | || || || || |||||||| || Sbjct 716025 GATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTT 716084 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| ||||||||| Sbjct 716085 TCCGGTCAAAGTCTTGACAAAGATTTGCATA 716115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||| || ||| ||| ||| | || || Sbjct 716362 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCA 716421 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | || | |||||||||||| ||||| ||||| ||||| | Sbjct 716422 AGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGA 716481 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||||||| | ||| || || | || ||||| || Sbjct 716482 ATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTG 716541 Query 15335 CCTGTCAGAGTTTTTAC 15351 || ||||| || || || Sbjct 716542 CCAGTCAGGGTCTTGAC 716558 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || ||||| ||||||||||| | | | | ||||||| Sbjct 716133 AACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTC 716192 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || |||||| | || | | || |||||| ||| || || || || || Sbjct 716193 AAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTG 716252 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| | || ||||| || | ||| || || | || || || || Sbjct 716253 AATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTT 716312 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| || |||||| Sbjct 716313 TCCAGTCAAAGTCTTAACAAAGATCTGCATA 716343 >seq16 Length=1327714 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || || |||||||||||| ||| | | | || || | ||| Sbjct 332103 ATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCGAGTTG 332162 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | |||| |||||||||||| |||||||||||| ||||| ||||| Sbjct 332163 CTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGGATTTT 332222 Query 15280 GCTCTTTACAATTTCTATGGTATCG 15304 | ||| ||| | || ||||||||| Sbjct 332223 GGACTTGACATTGTCGATGGTATCG 332247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178886601811