Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq4 105 5e-18
seq16 100 2e-16
>seq4
Length=1888314
Score = 105 bits (116), Expect = 5e-18
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| ||||| || || || || ||||| ||||||||||| || || | | | | || ||
Sbjct 715905 AACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTC 715964
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||||| || ||||| | ||||| || || |||||| ||| || || || |||||
Sbjct 715965 CAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTG 716024
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| || ||| ||| | || ||||| || | || || || || |||||||| ||
Sbjct 716025 GATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTT 716084
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| ||| || ||||| |||||||||
Sbjct 716085 TCCGGTCAAAGTCTTGACAAAGATTTGCATA 716115
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||||||||| || || || ||||| || ||| ||| ||| | || ||
Sbjct 716362 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCA 716421
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||| ||||| ||| | || | |||||||||||| ||||| ||||| ||||| |
Sbjct 716422 AGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGA 716481
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| || | || ||||||||| | ||| || || | || ||||| ||
Sbjct 716482 ATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTG 716541
Query 15335 CCTGTCAGAGTTTTTAC 15351
|| ||||| || || ||
Sbjct 716542 CCAGTCAGGGTCTTGAC 716558
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||| || || || ||||| ||||||||||| | | | | |||||||
Sbjct 716133 AACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTC 716192
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| ||| || |||||| | || | | || |||||| ||| || || || || ||
Sbjct 716193 AAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTG 716252
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| ||| ||| ||| | || ||||| || | ||| || || | || || || ||
Sbjct 716253 AATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTT 716312
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| ||| || ||||| || ||||||
Sbjct 716313 TCCAGTCAAAGTCTTAACAAAGATCTGCATA 716343
>seq16
Length=1327714
Score = 100 bits (110), Expect = 2e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||| || || || || || |||||||||||| ||| | | | || || | |||
Sbjct 332103 ATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCGAGTTG 332162
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||||||||| | |||| |||||||||||| |||||||||||| ||||| |||||
Sbjct 332163 CTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGGATTTT 332222
Query 15280 GCTCTTTACAATTTCTATGGTATCG 15304
| ||| ||| | || |||||||||
Sbjct 332223 GGACTTGACATTGTCGATGGTATCG 332247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362178886601811
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |