Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq42 226 4e-54 seq4 113 6e-20 >seq42 Length=298824 Score = 226 bits (250), Expect = 4e-54 Identities = 1314/2068 (64%), Gaps = 55/2068 (3%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 || || || || ||||| || || | | ||||| ||||||||||| || ||||| ||| Sbjct 241572 GTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTTTTCAGA 241631 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| || || |||||||| || | ||| | ||||| || Sbjct 241632 CCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTGTGGGATCCTTCATG 241691 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| ||||| ||| || ||| | || || | ||| || ||||||| | | Sbjct 241692 TGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCATTTGGACG 241751 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || |||| |||||||||| || || |||| ||| ||||| |||| | | Sbjct 241752 ATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 241811 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | |||||||| ||||||||||| || || || | ||||| || | ||| | Sbjct 241812 TTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 241871 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | || | | | | || | || || || ||||| || || ||| Sbjct 241872 CAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGACTTGGAACTCGCCA 241931 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | | || | |||| ||| || || ||||| || || | ||||||| || Sbjct 241932 GCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGCACTCATTGAAGCCA 241991 Query 62412 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | ||||||| | | || || |||| |||||||| || || | || ||||| | |||||| Sbjct 241992 AGAATTTGA-CTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACC 242050 Query 62471 GTATGTTC--TGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAAC 62527 ||||| ||||||| | || | || | ||||||| ||| ||||| | || ||| Sbjct 242051 --ATGTTGCTTGATTTTCTGCTTCA-AGCTGTCCCAATCCCAGAGATCTGTTGGAGTAAC 242107 Query 62528 NNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 62587 || | || || ||| || || || |||| || || Sbjct 242108 ACCCCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATA 242167 Query 62588 TGGTCCTTCCTTCTCAGCTAGTTCACAACTC--GCCTCTAATGCACCGTAATAAATGGTT 62645 | || || || || || ||| ||| || | ||| | | || ||||| Sbjct 242168 AGTGCCATCAACCTTGGCAAGCTCA--ACTGAAGCAGTGAGTGCGGCATGGTAGATGGTC 242225 Query 62646 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704 |||||||| | | || || | |||| || || | || |||||| | ||||| Sbjct 242226 TCGAAGATTTGAATGTTGAGGTGCTTG-GCCTCTGGAGAGTCGAATGGAAGACG-AAGAG 242283 Query 62705 --AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62762 || ||| || || || | || || ||||||| ||||||||| || | || Sbjct 242284 CCAAGAAA-GCATCAGCAAGACCCTGGACACCAACGGCGATAGGTCGGTGGCGGAAGTTG 242342 Query 62763 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822 | | ||||| |||| ||| ||||| || | ||| || || || || | || || Sbjct 242343 CTTCTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTTG 242402 Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCT--ATTACA 62879 |||| |||| | || || | ||| | | || ||| || ||| | | || | Sbjct 242403 ACAACGACTTGGCAGACTTCGTGAAGTCTCTGGAAGTCATAAGTGCCGTTGTTCATGTCG 242462 Query 62880 A-ACATGTTCAA--GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 | | | || | ||||| || |||| || || ||||| ||||||| | | | Sbjct 242463 ACATAGGTAGGAAGGGCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAG 242522 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTT--GATAGTTCCTAAATTTTGTTGAT 62994 || | | ||||||||||| || || | | ||| ||| || || | ||| | || | Sbjct 242523 TACTCAACAATCTCAGTGCAGAGGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGGT 242580 Query 62995 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63054 | |||||| |||| || |||||||| ||||| ||||| ||| | ||||| || |||||| Sbjct 242581 TGCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAG 242640 Query 63055 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTC 63112 || | || | | ||||| | | ||||| || | || | | | | ||| Sbjct 242641 CCTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGTC--TTGCGACCCTTACCTTC 242698 Query 63113 TCTTTCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 | || || | ||| | | | ||||| || || || | |||| |||| || Sbjct 242699 GCGCTCATACTGCTCGTAGAGAGCC--TCGAATTCATCGCCATAGACATCAGCCAAGCCT 242756 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 || || |||| || |||||||| | |||||| || | | | ||||| ||||| || Sbjct 242757 GGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAA 242816 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 |||||||||||||| || || || ||||| | | || ||||| || || | Sbjct 242817 AGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGA 242876 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 |||||| |||||| ||| || | | | ||| | ||||| || || | || || || Sbjct 242877 TTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCG 242936 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 | | | || || || ||||| || || || || | ||| | ||| ||||| || | ||| Sbjct 242937 AAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACT 242996 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 | | ||| || | || ||||| || ||||||| || || | || ||| ||| | Sbjct 242997 CGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTA 243056 Query 63471 GCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 || || || | || ||| || || ||||| || || | || || || | |||| Sbjct 243057 GCGCGGATTCGATGAACGTTG--AGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGC 243114 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 | || || ||||| |||||||| || || || || || |||||| | || |||| Sbjct 243115 AAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAAC 243174 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 | ||| | |||| | ||| || ||| || | || || ||||| ||||| | Sbjct 243175 ATGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGA 243234 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63707 | || || | || | |||||||| |||||||| || | || ||||| || | ||| Sbjct 243235 AGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCG-TGA 243293 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 || || ||||| || ||||| | |||||| || || | ||| ||||||| || | Sbjct 243294 ATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGAGG 243353 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 63825 | | ||| ||| || | ||| || || ||||| || | ||| ||||| |||| Sbjct 243354 CGGAGGAGGTATGATCGCTCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAA--TCTC 243411 Query 63826 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC-TATATCCATGGTG 63884 | ||||| | |||| | || || |||| ||| | ||| |||| | | || ||| Sbjct 243412 GGTCGTAGACAATAGCGGAATTAAGTTCTGCCTCGTGCTTGATAACACACTTGTAT-GTG 243470 Query 63885 ATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63943 || | || || |||||| | || ||||| |||||| || |||||| | | || Sbjct 243471 -GCCTCGCTGATCATAGGAGAAAGCTTGCCATTCCGAGGATTGACGTAGTTGTAGAGGTC 243529 Query 63944 CTCCATCAC-TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 64002 ||||| || || | | || || || | |||||| || || || || || |||| Sbjct 243530 TGATATCACAGTCGAGAACT-GCTTCTTGGTCTGCTTGTGGAGGTTGGAGACTGCAATTC 243588 Query 64003 TGGCGGCTAGAATGGCATAATCCGGATG 64030 || || || |||||||| || ||||| Sbjct 243589 GTGCAGCGAGGATGGCATAGTCGGGATG 243616 >seq4 Length=1888314 Score = 113 bits (124), Expect = 6e-20 Identities = 333/513 (65%), Gaps = 3/513 (1%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||||||||| ||||| || || || || || || ||||| || || | | || || || Sbjct 1224140 TTTTTGGTAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTT 1224199 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| || ||||| || |||| | || || | || | | || | || || Sbjct 1224200 CTCCATAAAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTGCCGAGGGCAAGAAG 1224259 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || | ||| |||||||| || || ||| ||||||| | | ||||| || | || Sbjct 1224260 CAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAGGAG 1224319 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 1224320 TGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAATGAC 1224379 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | || | || | || || | ||| || || || | | || || || Sbjct 1224380 GTCTTGGACAGCTTGCTTGCTTGGGCGGTGCTTCAAGTGAGAGAAGAGAAGGCAAGCAAA 1224439 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 ||| ||| ||||||||||| | | || ||||| ||||| || || || || | ||| Sbjct 1224440 GTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGCCAT 1224499 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || |||||||| || | ||| || ||||| ||||| || ||| |||||||| || || Sbjct 1224500 AAGACCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCACTGAAGAAGATACCCTC 1224559 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 33488 || || || || || | || | | || | | | |||| || |||||||| Sbjct 1224560 GACGGCGGCGAATGCGACGAGACGTTGAGCAAATGTAGAGTTCTTGTCTTGAATCCACTT 1224619 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 |||||| ||||||||||| || | ||| || Sbjct 1224620 GACAGCCCAGTCGGCCTTCTTCTTGATACATGG 1224652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946647134360