Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq42 96.9 3e-15 seq4 86.0 6e-12 >seq42 Length=298824 Score = 96.9 bits (106), Expect = 3e-15 Identities = 422/653 (65%), Gaps = 31/653 (5%) Strand=Plus/Plus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 ||| |||||| ||| || | ||||| || |||||||||| | ||||||| ||| Sbjct 242690 CTTACCTTCGCGCTCATACTGCTCGTAGAGAGCCTCGAATTCATCGCCATAGACATCAGC 242749 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCT 148354 || || || ||||| | |||||||||||| | ||| | | || ||||| || | Sbjct 242750 CAAGCCTGGGCACTCATTGGGGCACATCAAAGTCCA---CTCGCCATTCTTTTCAACTCG 242806 Query 148355 CTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC 148414 |||||| || |||||||| |||||| ||| | | ||||| ||||| | ||||| Sbjct 242807 CTTCATGAAAAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTC 242866 Query 148415 GGCACCCATATTGCGCTTT---AGATCCaaaaaagta----aaaaCGTCTGCGTGCCAAG 148467 || ||| |||| ||||| || ||| || || || |||||||| | Sbjct 242867 CTTGCCGTGATT---CTTTCGAAGATC----AAGGTACTCGAAGACATCGGCGTGCCATG 242919 Query 148468 GCTCGATGTATACGGTCATGGCGCCT--TTCCTT-TTACCTCCTTGATCGACATGGCGTA 148524 |||| | || | | | || ||| | ||| ||||| ||||| || || | || | Sbjct 242920 GCTCAAGATAGATAGCGAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACG-A 242978 Query 148525 GCA-TGCTATTAAAAACACGCAATGCA-GGTCCCAATCCCGCCGCAGTT-CCGTTTGTGG 148581 ||| || | || || || || | ||| || | || ||| |||| || ||||| Sbjct 242979 GCAGTGTTGTTGAAGACTCGGA--GCATGGGGACGATGCCGTTCGAGTTACCATTTGTTC 243036 Query 148582 ATTCAATTTTACTATTGGTGGCGCGAATTTGAGTGACATTCAGGCCGATGCCGCCTCCGT 148641 | |||| | ||| ||||| ||| || || || ||||| || || || | | Sbjct 243037 CTGCAATGTAGGCTCCGGTAGCGCGGATTCGATGAACGTTGAGGCCAATTCCACCAGCAT 243096 Query 148642 GTTTAGATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTT 148701 || || |||||||| ||| || | ||| | ||||| |||| ||||||||||| | Sbjct 243097 TCTTGGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCT 243156 Query 148702 GAATGTTAAGCAGGTAGCACGATGACATTTGAGGCATTTTCA-TGCCAGACGAAAATAGA 148760 |||| | ||| | || || || | ||| ||| | | | | |||| | || ||| Sbjct 243157 TCATGTCGACAAGGAAACATGAAGAGAGTTG-GGCTTGTGGAGTACCAGCAGCGAAGAGA 243215 Query 148761 GTTGGACTAGCGTGAGTGAACAGCTTTGCCCGCATCAATCTATAGGATTCGATAGCGCTT 148820 ||||| ||| || ||||| ||| ||||| | || | || || || Sbjct 243216 GTTGGGGAAGCATGCGTGAAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCC 243275 Query 148821 TCGATGTCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873 ||||| || ||||| ||||| | ||||| ||||| | ||||||||| || Sbjct 243276 TCGATATCTTCACCGTGAATGCCGACTGCTACTCGCATAATCATGTGTTGTGG 243328 >seq4 Length=1888314 Score = 86.0 bits (94), Expect = 6e-12 Identities = 228/348 (66%), Gaps = 19/348 (5%) Strand=Plus/Plus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 ||| || || || || || ||||| || ||||||||||| | || || ||||| | ||| Sbjct 1224146 GTAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTTCTCCAT 1224205 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 ||| || || || || |||| ||| | ||| || | ||| | | | | ||| || Sbjct 1224206 AAAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTGCCGAGGGCAAGAAGCAGACG 1224265 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACAT-GGATTGCGAATTCATGCCCAACATAGCGA 119823 ||| || || ||||||||||||| ||| |||| ||| |||||||| | | || Sbjct 1224266 ATCAGCGACGAACTCGATGTATTGCTTCATCAGATT-CGAGTTCATGCCAAGGAGTGCAC 1224324 Query 119824 CCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAAACATACTCA 119883 || | ||| | || ||||| || | ||||| ||||| ||||| || | Sbjct 1224325 AAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAATGA------ 1224378 Query 119884 ACACCTTGGTCTTGGAGAGCTTGTTCTTTTCGG----GAATATATTTATTGTAGTATAGA 119939 |||||||| |||||| | || || | | | | | | || || Sbjct 1224379 -------CGTCTTGGACAGCTTGCTTGCTTGGGCGGTGCTTCAAGTGAGAGAAGAGAAGG 1224431 Query 119940 CAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTG 119987 ||||||||||||||||| || || ||||| | || |||||||| ||| Sbjct 1224432 CAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTG 1224479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661975187120