Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq42 311 2e-79
seq1 102 2e-16
>seq42
Length=298824
Score = 311 bits (344), Expect = 2e-79
Identities = 1090/1677 (65%), Gaps = 40/1677 (2%)
Strand=Plus/Minus
Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459
||||| | ||| ||| ||||| || ||||||| | || |||||||| ||
Sbjct 243382 AAGACTCTCGAGCGATCATACCTCCTCCGCCTCAATGGCAAGATCTGCGAACGCCCACAA 243323
Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519
|| ||| | ||||| || || | || || || | ||| | || || ||||||||
Sbjct 243322 CACATGATTATGCGAGTAGCAGTCGGCATTCACGGTGAAGATATCGAGGCTGCGATTGAG 243263
Query 363520 ACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCAACAATGTACAATG 363577
||||| || || | || | | || |||||||| || | ||||| | | | ||
Sbjct 243262 ACATACAATCTGAT--GTCCCAGAAGTGCTTCACGCATGCTTCCCCAACTCTCTTCGCTG 243205
Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637
|||| |||| | | || | ||||| || || ||| | | |||||||| || |
Sbjct 243204 CTGGTACTCCACAAGCCCAACTCTCTTCATGTTTCCTTGTCGACATGAAGGAGGACAGTA 243145
Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697
|||| ||||||| |||||| | |||| ||| || | |||||||||||||| || ||||
Sbjct 243144 TCGACGGTATCTACGACACATTGAAGACTTGCGCCATGATTTCCAAGAATGCTGGTGGAA 243085
Query 363698 TTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGG 363755
|||| | | || || | | | || || || | | | ||||| || ||| ||
Sbjct 243084 TTGGCCTCAACGTTCATCGAA-TCCGCGCTACCGGAGCCT-ACATTGCAGGAACAAATGG 243027
Query 363756 ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGA 363815
||||||| || | || |||||||| || || || |||| ||||| | ||||| ||
Sbjct 243026 TAACTCGAACGGCATCGTCCCCATGCTCCGAGTCTTCAACAACACTGCTCGTTACGTTGA 242967
Query 363816 CCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGA 363875
||| ||||| ||||| ||| || || ||||| ||||| ||||| || |||||
Sbjct 242966 CCAAGGTGGTAACAAGCGACCAGGTGCTTTCGCTATCTATCTTGAGCCATGGCACGCCGA 242907
Query 363876 TATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACGTG 363934
| | || |||| ||||| || || || || ||||| || ||||| | || || ||||
Sbjct 242906 TGTCTTCGAGTACCTTGATCTTCGAAAGAATCACGGCAAG-GAGGAGGTCCGAGCTCGTG 242848
Query 363935 ATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGA 363994
|||| ||||| || || ||| || |||| | ||| |||||||| || || ||||
Sbjct 242847 ATCTCTTCTACGCCCTGTGGATTCCTGATCTTTTCATGAAGCGAGTTGAA------AAGA 242794
Query 363995 ATTG---GTC-ACTCT--TTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTG 364048
|| | || ||| | | ||||| | || || ||||| | | ||||| | || |
Sbjct 242793 ATGGCGAGTGGACTTTGATGTGCCCCAATGAGTGCCCAGGCTTGGCTGATGTCTATGGCG 242734
Query 364049 ACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTC 364108
| || | | ||||| ||||| ||||||| || || |||| ||| ||||| ||
Sbjct 242733 ATGAATTCGAGGCTCTCTACGAGCAGTATGAGCGCGAAGGTAAGGGTCGCAAGACCATCA 242674
Query 364109 CCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATA 364168
|| || ||||| |||| ||||| |||| | |||| ||||| || | |||| |
Sbjct 242673 AGGCGCAAAAGCTCTGGTACTCCATCCTGGAGGCTCAGACCGAGACTGGCAATCCCTTCA 242614
Query 364169 TGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGC 364228
|| | ||||| ||| | |||||| | ||| ||||||| || | || ||||| || | |
Sbjct 242613 TGCTTTACAAGGATGCTTGCAACAGAAAGAGCAACCAGAAGAATCTCGGTACCATCC-GA 242555
Query 364229 AGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287
|| | ||||| || || |||||| |||| ||| ||||| || ||| |||||| ||
Sbjct 242554 AGCTCGAACCTCTGCACTGAGATTGTTGAGTACTGTGCTCCAGATGAGGTTGCCGTCTGC 242495
Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA------AAAGATGGTACTTTTGACCAC 364341
||| | || || | || ||||| | | ||| || | || |||| |||| |
Sbjct 242494 AACTTGGCTTCACTTGCCCTTCCTACCTATGTCGACATGAACAACGGCACTTATGACTTC 242435
Query 364342 CAGCATCTTTATGACGTAACCTATCATGCTACTTG-CAAT--CTCGA-CAAGGTTATCGA 364397
||| ||| | || || || || | | ||| ||| || || |||| | || ||
Sbjct 242434 CAGAGACTTCACGAAGT---CTGCCAAG-TCGTTGTCAAGAACTTGAACAAGATCATTGA 242379
Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGG 364457
|| ||||| || |||| |||||| || | || | || || || || || |
Sbjct 242378 TGTCAACTATTACCCTGTTCCCGAAGCCAAGAGAAGCAACTTCCGCCACCGACCTATCGC 242319
Query 364458 TCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCC 364517
||||||| ||||| || ||||| | ||| || || | |||| || || ||
Sbjct 242318 CGTTGGTGTCCAGGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTCCATTCGACTCTCC 242259
Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577
|| || || || | | ||||| || || || || ||||||| | |||||
Sbjct 242258 AGAGGCCAAGCACCTCAACATTCAAATCTTCGAGACCATCTACCATGCCGCACTCACTGC 242199
Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637
||| ||| | || || | || | || || | |||||| || ||| ||
Sbjct 242198 TTCAGTTGAGCTTGCCAAGGTTGATGGCACTTATGAGACATTTGAGGGTTCTCCTGCCTC 242139
Query 364638 GCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGA 364697
|||| | || |||| |||| | ||| ||| || ||| | | | ||| | |||||
Sbjct 242138 CAAGGGCGAGTTGCAGTATGATATGTGGGGTGTTACTCCAACAGATCTCTGGGATTGGGA 242079
Query 364698 TACGCTACGTTCC-AACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCA 364756
| ||| | || | ||| | |||||| |||||| | | || || || |
Sbjct 242078 CA-GCTTGAAGCAGAAAATCAAGCAACATGGTCTTCGCAATAGCTTGCTTGTCGCTCCTA 242020
Query 364757 TGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAA 364816
|||| || || || || || || || ||| |||||||| || || | |||
Sbjct 242019 TGCCAACTGCCAGCACCAGTCAAATTCTTGGCTTCAATGAGTGCTTTGAGCCATATACGT 241960
Query 364817 GCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAG 364876
||| | || || || || |||||| | || || || | || || || | |
Sbjct 241959 CCAACATCTACTCTCGTCGTGTTCTTGCTGGCGAGTTCCAAGTCGTCAACCCATGGTTGC 241900
Query 364877 TCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCG 364936
||||||||||| ||| || || ||| ||||| |||||||||| |||||| ||||
Sbjct 241899 TCAAGGATCTTGTTGACATGGGTCTCTGGTCTGACAACATGAAGAACCGTATCATTGCCG 241840
Query 364937 CTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAA 364996
| ||| || | |||||||| || | |||| ||| | ||| || ||||||| |
Sbjct 241839 ATGGTGGATCGATTCAGAACATCCCCAACATCCCAGCTGATATCAAGGCTCTTTACAAGA 241780
Query 364997 CCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTT 365053
|||| |||||||| || |||||| || | | ||||| || || || |||||||
Sbjct 241779 CCGTTTGGGAAATCTCACAGCGAACCATCGTCCAAATGGCCGCTGACCGTGGTGCTT 241723
>seq1
Length=2762476
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 65877 AATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGAT 65936
|| ||| ||||| || || |||| |||||| ||||| ||||||| ||| |||||
Sbjct 1592254 AACCGTGCCGTCGTACTTCGCCATAACATCTTCGAGAGCCTTGACAAGACGACGTTGGAT 1592195
Query 65937 GTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGC 65996
||||||| | | ||||| || || || ||||||| ||||||||||| || | ||||||
Sbjct 1592194 GTAACCAGTTTCGGCAGTCTTGACAGCAGTATCAATAAGACCTTCACGACCAGCCATTGC 1592135
Query 65997 AGAAAAGAAAAACTCAGTCGG 66017
| ||||| || ||||||||
Sbjct 1592134 ATGGAAGAAGAATTCAGTCGG 1592114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303352414355522
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |