Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq42 311 2e-79 seq1 102 2e-16 >seq42 Length=298824 Score = 311 bits (344), Expect = 2e-79 Identities = 1090/1677 (65%), Gaps = 40/1677 (2%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| | ||| ||| ||||| || ||||||| | || |||||||| || Sbjct 243382 AAGACTCTCGAGCGATCATACCTCCTCCGCCTCAATGGCAAGATCTGCGAACGCCCACAA 243323 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | ||||| || || | || || || | ||| | || || |||||||| Sbjct 243322 CACATGATTATGCGAGTAGCAGTCGGCATTCACGGTGAAGATATCGAGGCTGCGATTGAG 243263 Query 363520 ACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCAACAATGTACAATG 363577 ||||| || || | || | | || |||||||| || | ||||| | | | || Sbjct 243262 ACATACAATCTGAT--GTCCCAGAAGTGCTTCACGCATGCTTCCCCAACTCTCTTCGCTG 243205 Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637 |||| |||| | | || | ||||| || || ||| | | |||||||| || | Sbjct 243204 CTGGTACTCCACAAGCCCAACTCTCTTCATGTTTCCTTGTCGACATGAAGGAGGACAGTA 243145 Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697 |||| ||||||| |||||| | |||| ||| || | |||||||||||||| || |||| Sbjct 243144 TCGACGGTATCTACGACACATTGAAGACTTGCGCCATGATTTCCAAGAATGCTGGTGGAA 243085 Query 363698 TTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGG 363755 |||| | | || || | | | || || || | | | ||||| || ||| || Sbjct 243084 TTGGCCTCAACGTTCATCGAA-TCCGCGCTACCGGAGCCT-ACATTGCAGGAACAAATGG 243027 Query 363756 ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGA 363815 ||||||| || | || |||||||| || || || |||| ||||| | ||||| || Sbjct 243026 TAACTCGAACGGCATCGTCCCCATGCTCCGAGTCTTCAACAACACTGCTCGTTACGTTGA 242967 Query 363816 CCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGA 363875 ||| ||||| ||||| ||| || || ||||| ||||| ||||| || ||||| Sbjct 242966 CCAAGGTGGTAACAAGCGACCAGGTGCTTTCGCTATCTATCTTGAGCCATGGCACGCCGA 242907 Query 363876 TATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACGTG 363934 | | || |||| ||||| || || || || ||||| || ||||| | || || |||| Sbjct 242906 TGTCTTCGAGTACCTTGATCTTCGAAAGAATCACGGCAAG-GAGGAGGTCCGAGCTCGTG 242848 Query 363935 ATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGA 363994 |||| ||||| || || ||| || |||| | ||| |||||||| || || |||| Sbjct 242847 ATCTCTTCTACGCCCTGTGGATTCCTGATCTTTTCATGAAGCGAGTTGAA------AAGA 242794 Query 363995 ATTG---GTC-ACTCT--TTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTG 364048 || | || ||| | | ||||| | || || ||||| | | ||||| | || | Sbjct 242793 ATGGCGAGTGGACTTTGATGTGCCCCAATGAGTGCCCAGGCTTGGCTGATGTCTATGGCG 242734 Query 364049 ACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTC 364108 | || | | ||||| ||||| ||||||| || || |||| ||| ||||| || Sbjct 242733 ATGAATTCGAGGCTCTCTACGAGCAGTATGAGCGCGAAGGTAAGGGTCGCAAGACCATCA 242674 Query 364109 CCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATA 364168 || || ||||| |||| ||||| |||| | |||| ||||| || | |||| | Sbjct 242673 AGGCGCAAAAGCTCTGGTACTCCATCCTGGAGGCTCAGACCGAGACTGGCAATCCCTTCA 242614 Query 364169 TGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGC 364228 || | ||||| ||| | |||||| | ||| ||||||| || | || ||||| || | | Sbjct 242613 TGCTTTACAAGGATGCTTGCAACAGAAAGAGCAACCAGAAGAATCTCGGTACCATCC-GA 242555 Query 364229 AGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 || | ||||| || || |||||| |||| ||| ||||| || ||| |||||| || Sbjct 242554 AGCTCGAACCTCTGCACTGAGATTGTTGAGTACTGTGCTCCAGATGAGGTTGCCGTCTGC 242495 Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA------AAAGATGGTACTTTTGACCAC 364341 ||| | || || | || ||||| | | ||| || | || |||| |||| | Sbjct 242494 AACTTGGCTTCACTTGCCCTTCCTACCTATGTCGACATGAACAACGGCACTTATGACTTC 242435 Query 364342 CAGCATCTTTATGACGTAACCTATCATGCTACTTG-CAAT--CTCGA-CAAGGTTATCGA 364397 ||| ||| | || || || || | | ||| ||| || || |||| | || || Sbjct 242434 CAGAGACTTCACGAAGT---CTGCCAAG-TCGTTGTCAAGAACTTGAACAAGATCATTGA 242379 Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGG 364457 || ||||| || |||| |||||| || | || | || || || || || | Sbjct 242378 TGTCAACTATTACCCTGTTCCCGAAGCCAAGAGAAGCAACTTCCGCCACCGACCTATCGC 242319 Query 364458 TCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCC 364517 ||||||| ||||| || ||||| | ||| || || | |||| || || || Sbjct 242318 CGTTGGTGTCCAGGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTCCATTCGACTCTCC 242259 Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 || || || || | | ||||| || || || || ||||||| | ||||| Sbjct 242258 AGAGGCCAAGCACCTCAACATTCAAATCTTCGAGACCATCTACCATGCCGCACTCACTGC 242199 Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 ||| ||| | || || | || | || || | |||||| || ||| || Sbjct 242198 TTCAGTTGAGCTTGCCAAGGTTGATGGCACTTATGAGACATTTGAGGGTTCTCCTGCCTC 242139 Query 364638 GCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGA 364697 |||| | || |||| |||| | ||| ||| || ||| | | | ||| | ||||| Sbjct 242138 CAAGGGCGAGTTGCAGTATGATATGTGGGGTGTTACTCCAACAGATCTCTGGGATTGGGA 242079 Query 364698 TACGCTACGTTCC-AACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCA 364756 | ||| | || | ||| | |||||| |||||| | | || || || | Sbjct 242078 CA-GCTTGAAGCAGAAAATCAAGCAACATGGTCTTCGCAATAGCTTGCTTGTCGCTCCTA 242020 Query 364757 TGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAA 364816 |||| || || || || || || || ||| |||||||| || || | ||| Sbjct 242019 TGCCAACTGCCAGCACCAGTCAAATTCTTGGCTTCAATGAGTGCTTTGAGCCATATACGT 241960 Query 364817 GCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAG 364876 ||| | || || || || |||||| | || || || | || || || | | Sbjct 241959 CCAACATCTACTCTCGTCGTGTTCTTGCTGGCGAGTTCCAAGTCGTCAACCCATGGTTGC 241900 Query 364877 TCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCG 364936 ||||||||||| ||| || || ||| ||||| |||||||||| |||||| |||| Sbjct 241899 TCAAGGATCTTGTTGACATGGGTCTCTGGTCTGACAACATGAAGAACCGTATCATTGCCG 241840 Query 364937 CTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAA 364996 | ||| || | |||||||| || | |||| ||| | ||| || ||||||| | Sbjct 241839 ATGGTGGATCGATTCAGAACATCCCCAACATCCCAGCTGATATCAAGGCTCTTTACAAGA 241780 Query 364997 CCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTT 365053 |||| |||||||| || |||||| || | | ||||| || || || ||||||| Sbjct 241779 CCGTTTGGGAAATCTCACAGCGAACCATCGTCCAAATGGCCGCTGACCGTGGTGCTT 241723 >seq1 Length=2762476 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 65877 AATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGAT 65936 || ||| ||||| || || |||| |||||| ||||| ||||||| ||| ||||| Sbjct 1592254 AACCGTGCCGTCGTACTTCGCCATAACATCTTCGAGAGCCTTGACAAGACGACGTTGGAT 1592195 Query 65937 GTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGC 65996 ||||||| | | ||||| || || || ||||||| ||||||||||| || | |||||| Sbjct 1592194 GTAACCAGTTTCGGCAGTCTTGACAGCAGTATCAATAAGACCTTCACGACCAGCCATTGC 1592135 Query 65997 AGAAAAGAAAAACTCAGTCGG 66017 | ||||| || |||||||| Sbjct 1592134 ATGGAAGAAGAATTCAGTCGG 1592114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352414355522