Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq60 140 2e-28 seq4 116 2e-21 seq16 87.8 1e-12 >seq60 Length=2671 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 538 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 479 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 478 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 444 >seq4 Length=1888314 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | ||| | |||||||||||||| |||||||||||| |||||||| | Sbjct 716114 TACCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTG 716173 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || |||| || | ||| || || || || || || | || || |||| | Sbjct 716174 ACAAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTG 716233 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || || ||| ||| || ||| ||||| | || || || | ||||| Sbjct 716234 GGATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAA 716293 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || ||||| || || ||||| || || || || |||||||| Sbjct 716294 CCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 >seq16 Length=1327714 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||||| || | ||||||||| |||||| || || |||||||| || Sbjct 332080 CCACCACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAG 332139 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||| || || || || || ||||||||||| |||| || Sbjct 332140 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGA 332199 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||||| ||| ||||| | || ||||| | || || Sbjct 332200 ATTCCTTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACC 332259 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 || | ||| ||||| || ||||| | ||| || ||||| Sbjct 332260 TCGAGTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946910166001