Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq42 221 2e-52 >seq42 Length=298824 Score = 221 bits (244), Expect = 2e-52 Identities = 1312/2069 (63%), Gaps = 57/2069 (3%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 || || || || ||||| || || | | ||||| ||||||||||| || ||||| ||| Sbjct 241572 GTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTTTTCAGA 241631 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || || |||||||| || | ||| | ||||| || Sbjct 241632 CCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTGTGGGATCCTTCATG 241691 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || ||||| ||||| ||| || ||| | || || | ||| || ||||||| | Sbjct 241692 TGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCATTTGGACG 241751 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || |||| |||||||||| || || |||| ||| ||||| |||| | | Sbjct 241752 ATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 241811 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | | |||||||| ||||||||||| || || || | ||||| || | ||| | Sbjct 241812 TTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 241871 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || | | || | | | | || | || || || ||||| || || ||| Sbjct 241872 CAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGACTTGGAACTCGCCA 241931 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | | || | |||| ||| || || ||||| || || | ||||||| || Sbjct 241932 GCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGCACTCATTGAAGCCA 241991 Query 62267 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 | ||||||| | | || || |||| |||||||| || || | || ||||| | |||||| Sbjct 241992 AGAATTTGA-CTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACC 242050 Query 62326 GTATGTTC--TGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAAC 62382 ||||| ||||||| | || | || | ||||||| ||| ||||| | || ||| Sbjct 242051 --ATGTTGCTTGATTTTCTGCTTCA-AGCTGTCCCAATCCCAGAGATCTGTTGGAGTAAC 242107 Query 62383 NNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 62442 || | || || ||| || || || |||| || || Sbjct 242108 ACCCCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATA 242167 Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTC--GCCTCTAATGCACCGTAATAAATGGTT 62500 | || || || || || ||| ||| || | ||| | | || ||||| Sbjct 242168 AGTGCCATCAACCTTGGCAAGCTCA--ACTGAAGCAGTGAGTGCGGCATGGTAGATGGTC 242225 Query 62501 TCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559 |||||||| | | || || | |||| || || | || |||||| | ||||| Sbjct 242226 TCGAAGATTTGAATGTTGAGGTGCTTG-GCCTCTGGAGAGTCGAATGGAAGACG-AAGAG 242283 Query 62560 --AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 || ||| || || || | || || ||||||| ||||||||| || | || Sbjct 242284 CCAAGAAA-GCATCAGCAAGACCCTGGACACCAACGGCGATAGGTCGGTGGCGGAAGTTG 242342 Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 | | ||||| |||| ||| ||||| || | ||| || || || || | || || Sbjct 242343 CTTCTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTTG 242402 Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCT--ATTACA 62734 |||| |||| | || || | ||| | | || ||| || ||| | | || | Sbjct 242403 ACAACGACTTGGCAGACTTCGTGAAGTCTCTGGAAGTCATAAGTGCCGTTGTTCATGTCG 242462 Query 62735 A-ACATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 | | | || | | ||| || |||| || || ||||| ||||||| | | | Sbjct 242463 ACATAGGTAGGAAGGGCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAG 242522 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTT--GATGGTTCCTAAATTTTGTTGAT 62849 || | | ||||||||||| || || | | ||| |||||| || | ||| | || | Sbjct 242523 TACTCAACAATCTCAGTGCAGAGGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGGT 242580 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 | |||||| |||| || |||||||| ||||| ||||| ||| | ||||| || |||||| Sbjct 242581 TGCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAG 242640 Query 62910 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TT 62966 || | || | | ||||| | | ||||| || | ||| | ||| || Sbjct 242641 CCTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGTC---TTGCGACCCTTACCTT 242697 Query 62967 CTCTTTCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 | | || || | ||| | | | ||||| || || || | |||| ||| || Sbjct 242698 CGCGCTCATACTGCTCGTAGAGAGCC--TCGAATTCATCGCCATAGACATCAGCCAAGCC 242755 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 || || |||| || |||||||| | |||||| || | | | ||||| ||||| || Sbjct 242756 TGGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAA 242815 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 |||||||||||||| || || || ||||| | | || ||||| || || Sbjct 242816 AAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTG 242875 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||||||| |||||| ||| || | | | ||| | ||||| || || | || || || Sbjct 242876 ATTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGC 242935 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | | | || || || ||||| || || || || | ||| | ||| ||||| || | || Sbjct 242936 GAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGAC 242995 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACT 63324 || | ||| || | || || || || ||||||| || |||| || ||| ||| | Sbjct 242996 TCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGT 243055 Query 63325 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63382 || || || | || ||| || || ||||| || || | || || || | ||| Sbjct 243056 AGCGCGGATTCGATGAACGTTG--AGGCCAATTCCACCAGCATTCTTGGAAATCATGGCG 243113 Query 63383 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 63442 || || || || || ||||| || || ||||| || ||| |||||| | || ||| Sbjct 243114 CAAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAA 243173 Query 63443 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTA 63502 || ||| | |||| | ||| || ||| || | || || ||||| || || Sbjct 243174 CATGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTG 243233 Query 63503 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATG 63561 || || || | || | |||||||| |||||||| || | || ||||| || | || Sbjct 243234 AAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCG-TG 243292 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 ||| || ||||| || ||||| | |||||| || || | ||| ||||||| || | Sbjct 243293 AATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGAG 243352 Query 63622 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 63679 | | ||| ||| || | ||| || || ||||| || | ||| ||||| ||| Sbjct 243353 GCGGAGGAGGTATGATCGCTCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAA--TCT 243410 Query 63680 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC-TACATCCATG-G 63737 || ||||| | |||| | || || |||| ||| | ||| |||| || | ||| | Sbjct 243411 CGGTCGTAGACAATAGCGGAATTAAGTTCTGCCTCGTGCTTGATAACACACTTGTATGTG 243470 Query 63738 TAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAAT 63797 | || || |||||| || | || ||||| ||||||||| |||||| | | | Sbjct 243471 GCCTCGCTG--ATCATAGGAGAAAGCTTGCCATTCCGAGGATTGACGTAGTTGTAGAGGT 243528 Query 63798 CCTCCATCAC-TTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATT 63856 | ||||| || || | | || || || | ||||| || || || || || ||| Sbjct 243529 CTGATATCACAGTCGAGAACT-GCTTCTTGGTCTGCTTGTGGAGGTTGGAGACTGCAATT 243587 Query 63857 CTAGCGGCTAGAATGGCATAATCCGGATG 63885 | || || || |||||||| || ||||| Sbjct 243588 CGTGCAGCGAGGATGGCATAGTCGGGATG 243616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631437651600