Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 132 4e-26
seq37 93.3 4e-14
seq26 87.8 2e-12
>seq4
Length=1888314
Score = 132 bits (146), Expect = 4e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| |||||||||||||| || |||| ||| | ||||||||||| ||
Sbjct 716114 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAGTCTTCG 716055
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || || || ||| || ||| ||||| || || || ||||| ||||
Sbjct 716054 GACACCATTGA--CAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCCGACC 715997
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || ||||| || || ||||| || |||| || || || | |||||||
Sbjct 715996 AGCAGCGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGGCGTACACTGAGTGATTACA 715937
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || ||||| || || || || ||||| || ||
Sbjct 715936 ACATCCAAAAGGAGTCGACTCTCCATTTGGTTCT 715903
Score = 105 bits (116), Expect = 6e-18
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || | ||||| | || || || || ||
Sbjct 716342 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCG 716283
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || ||| | || | ||| || || || || || ||||| |||
Sbjct 716282 GACACCATCGA--CAATGTCAAGTCCAAGATTCA-GGATAAGGAGGGCATCCCACCCGAC 716226
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | |||| || || || || ||| | ||||| | |||||| || ||||||
Sbjct 716225 CAGCAGAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTAC 716166
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||| || || || || ||||| || ||
Sbjct 716165 AACATTCAAAAGGAGTCGACTCTTCATTTGGTTCT 716131
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| ||||| |||| || || ||||||| | || || || || || || || |||||
Sbjct 716558 GTCAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGAC 716499
Query 25071 TCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129
||||| | || | ||| ||||| ||||| ||||| ||||||||||| || | ||
Sbjct 716498 AACGTGAAGTCGAAGATTCAG-GACAAGGAAGGCATTCCCCCTGACCAACAACGTCTCAT 716440
Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189
|| |||||||| ||| | || |||| || ||| | ||| || || || || || ||
Sbjct 716439 CTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAGGA 716380
Query 25190 ATCCACGCTACATTTAGTGCT 25210
||||| || || || |||||
Sbjct 716379 GTCCACCCTTCACTTGGTGCT 716359
>seq37
Length=479966
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || || | ||||| | || || || || ||
Sbjct 404295 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAATCTTCG 404236
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | ||| | || | ||| || || || || || ||||| |||||
Sbjct 404235 GACACTATCGACAACGTCAAGTCCAAGATTCA-GGATAAGGAGGGTATCCCACCCGACCA 404177
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | |||||||||| | || ||| | |||||| ||||| | ||| |||||
Sbjct 404176 GCAGAGACTTATTTTTGCTAGTAAGCAACTTGAAGATAGCCGCACCCTATCCGACTACAA 404117
Query 25178 TATTCAAAAAGAATC 25192
|||||||| || ||
Sbjct 404116 CATTCAAAAGGAGTC 404102
>seq26
Length=969302
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| | || || || ||||||| | || || ||||| || || ||||||
Sbjct 292092 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACTATC 292151
Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125
|| || || ||| || ||| ||||| || || |||||||| |||||||||||
Sbjct 292152 GA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTT 292209
Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185
| || |||||||| || ||| | ||||||| || || | |||||| || || ||||
Sbjct 292210 TGATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACCCTCTCCGATTATAACATCCAAA 292269
Query 25186 A 25186
|
Sbjct 292270 A 292270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327625035865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |