Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 >seq4 Length=1888314 Score = 114 bits (126), Expect = 1e-20 Identities = 202/294 (69%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| ||||| | || || || | || || |||| ||||||||| |||||| Sbjct 1224753 ATGTATGTGTCGATGAGAAGGGAGTATGTCTCGGAGTGGATATTCTCCATCATGATTTGG 1224812 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||||||||| || | ||| || | |||||| || || | || | ||| || | Sbjct 1224813 AATCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCACCACTGAAGCGCTCGACCAAG 1224872 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || ||||||||||| || || || || | | || || || | Sbjct 1224873 TTCTCGTTGACAATTCCATCGGATGCAGCGAAGAATGCGAGGACGTGGGAGATGAAGTAA 1224932 Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||| || || || ||| || | ||| ||| ||||| || || ||||| | ||| Sbjct 1224933 CGCTCGTCGTCATTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTCGATAGATCAATCTCT 1224992 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 ||| | ||||| || || || || || || |||||||| | ||| || | |||| Sbjct 1224993 TCGGCGGTCCAGAAAGACGCCTCGGCCTTCTTGTACATCTGCCAGATCTATTGA 1225046 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||| || || || | |||||| ||| || | Sbjct 1224431 GCAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAG 1224490 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| | | || || || ||||| | ||| || || || || || |||| || || Sbjct 1224491 ACCAGCCATAAGACCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCACTGAAGAA 1224550 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-C 93269 ||||| || ||||| || ||||| || | ||||| ||||| || || || || | Sbjct 1224551 GATACCCTCGACGGCGGCGAATGCGACGAGACGTTGAGCAAA---TGTAGAGTTCTTGTC 1224607 Query 93270 T--GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 | ||||| || | |||||| ||||| || ||||| ||||| || Sbjct 1224608 TTGAATCCACTTGACAGCCCAGTCGGCCTTCTTCTTGATACATGG 1224652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860305786040