Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4 114 1e-20
>seq4
Length=1888314
Score = 114 bits (126), Expect = 1e-20
Identities = 202/294 (69%), Gaps = 3/294 (1%)
Strand=Plus/Plus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|||||||| ||||| | || || || | || || |||| ||||||||| ||||||
Sbjct 1224753 ATGTATGTGTCGATGAGAAGGGAGTATGTCTCGGAGTGGATATTCTCCATCATGATTTGG 1224812
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
||||||||||| || | ||| || | |||||| || || | || | ||| || |
Sbjct 1224813 AATCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCACCACTGAAGCGCTCGACCAAG 1224872
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| || ||||| || ||||||||||| || || || || | | || || || |
Sbjct 1224873 TTCTCGTTGACAATTCCATCGGATGCAGCGAAGAATGCGAGGACGTGGGAGATGAAGTAA 1224932
Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||| || || || ||| || | ||| ||| ||||| || || ||||| | |||
Sbjct 1224933 CGCTCGTCGTCATTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTCGATAGATCAATCTCT 1224992
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652
||| | ||||| || || || || || || |||||||| | ||| || | ||||
Sbjct 1224993 TCGGCGGTCCAGAAAGACGCCTCGGCCTTCTTGTACATCTGCCAGATCTATTGA 1225046
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/225 (70%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| ||||||||||| || | ||| ||||| || || || | |||||| ||| || |
Sbjct 1224431 GCAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAG 1224490
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||| | | || || || ||||| | ||| || || || || || |||| || ||
Sbjct 1224491 ACCAGCCATAAGACCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCACTGAAGAA 1224550
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-C 93269
||||| || ||||| || ||||| || | ||||| ||||| || || || || |
Sbjct 1224551 GATACCCTCGACGGCGGCGAATGCGACGAGACGTTGAGCAAA---TGTAGAGTTCTTGTC 1224607
Query 93270 T--GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312
| ||||| || | |||||| ||||| || ||||| ||||| ||
Sbjct 1224608 TTGAATCCACTTGACAGCCCAGTCGGCCTTCTTCTTGATACATGG 1224652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860305786040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |