Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq16 123 2e-23 seq4 118 9e-22 seq37 111 1e-19 seq26 111 1e-19 seq42 100 2e-16 >seq16 Length=1327714 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || ||||| | |||||||| | ||| || |||| Sbjct 332282 ACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATCGACAATGTCAAGTCC 332223 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| ||||||||||| || ||||||||||| |||||||| || || || || ||||| Sbjct 332222 AAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTGATCTTCGCTGGCAAG 332163 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| |||||| |||||||||||||||| || || || || || | ||| Sbjct 332162 CAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACTCTTCAT 332103 Query 22423 TTAGTTTTGCG 22433 | || |||| Sbjct 332102 CTCGTCCTGCG 332092 >seq4 Length=1888314 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| ||||| || || || || ||||||| || || ||| | | Sbjct 716342 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCG 716283 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| || |||||||| || |||||||| || Sbjct 716282 GACACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAG 716223 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || || || | || || |||||| | || ||||||||| Sbjct 716222 CAGAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAAC 716163 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || | ||||| ||| | || | || || ||| Sbjct 716162 ATTCAAAAGGAGTCGACTCTTCATTTGGTTCTTCGTCTCCGAGGTGGT 716115 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || ||| | |||||||| | ||| | | || Sbjct 716546 ACTGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAACGTGAAGTCG 716487 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||| || ||||| || || ||||||||||| || || |||||||| Sbjct 716486 AAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAACAACGTCTCATCTTCGCCGGCAAG 716427 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| ||| || ||||||| || ||||| || || || |||||| | || Sbjct 716426 CAACTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAGGAGTCCACCCTTCAC 716367 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || | || |||||| Sbjct 716366 TTGGTGCTCCGTCTCCGTGGAGGT 716343 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| ||||| || || | || | |||||||| | | Sbjct 716114 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAGTCTTCG 716055 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || ||||||||||||||||| |||||||| || Sbjct 716054 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCCGACCAG 715995 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || || || |||||| || || | ||||||||| Sbjct 715994 CAGCGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGGCGTACACTGAGTGATTACAAC 715935 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||| || || || | ||||| ||| Sbjct 715934 ATCCAAAAGGAGTCGACTCTCCATTTGGTT 715905 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || || || | |||||| | || | |||| Sbjct 716830 ACCGGAAAGACCATCACTCTTGAGGTTGAGTCCTCGGATACCATCGATAACGTCAAGAGC 716771 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| || |||||||| |||||||| | || || || || || Sbjct 716770 AAGATTCAAGACAAGGAGGGAATCCCACCCGACCAACAACGCTTGATCTTCGCTGGAAAG 716711 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| | || ||||| |||||||| || || || ||| | ||| Sbjct 716710 CAGCTTGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCTACCCTCCAT 716651 >seq37 Length=479966 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || || || || || || ||||| | || || ||| | | Sbjct 404295 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAATCTTCG 404236 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| || ||||||||||| |||||||| || Sbjct 404235 GACACTATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAG 404176 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| | || || | || ||| ||||||| | ||||| |||||| Sbjct 404175 CAGAGACTTATTTTTGCTAGTAAGCAACTTGAAGATAGCCGCACCCTATCCGACTACAAC 404116 Query 22399 ATTCAAAAAGAATC 22412 |||||||| || || Sbjct 404115 ATTCAAAAGGAGTC 404102 >seq26 Length=969302 Score = 111 bits (122), Expect = 1e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || || ||||||| | ||| || |||| Sbjct 292107 ACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACTATCGACAATGTCAAGTCC 292166 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| |||||||| || ||||| ||| | || |||||||| || Sbjct 292167 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCCGGAAAG 292226 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || | || ||| ||| ||| |||||||||| ||||| ||||| Sbjct 292227 CAACTTGAAGATGGCCGTACCCTCTCCGATTATAACATCCAAAA 292270 >seq42 Length=298824 Score = 100 bits (110), Expect = 2e-16 Identities = 279/424 (66%), Gaps = 7/424 (2%) Strand=Plus/Plus Query 129985 GGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACC 130044 || ||||||||| ||||| |||| | ||| ||||| ||||| || | ||| || | | Sbjct 242769 GGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATC 242828 Query 130045 CACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTC--A 130102 ||||||||||| || | ||| || ||| ||||| || || | | |||| | Sbjct 242829 CACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTC-CTTGCCGTGATTC-TTTCGAA 242886 Query 130103 GTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCT 130162 | |||||| | ||| | | ||||||||||| || |||| ||| || || | || || Sbjct 242887 GATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTG 242946 Query 130163 TCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTG 130219 || ||| || ||||||||||||| || | | |||||| ||||||| | ||| | Sbjct 242947 GTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGG 243006 Query 130220 CCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGT 130279 | | ||||| | | || ||||| | ||||| | || ||| || | Sbjct 243007 GGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGATTC 243066 Query 130280 TATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCG 130339 ||||||| | || || || || || || || || |||| |||||| | | Sbjct 243067 GATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATG 243126 Query 130340 TTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGGCCAATT 130399 | || || || || |||||||||| || || |||| | |||||||| || | | || Sbjct 243127 TGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTT 243186 Query 130400 GGGC 130403 |||| Sbjct 243187 GGGC 243190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727636804115