Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq16 123 2e-23
seq4 118 9e-22
seq37 111 1e-19
seq26 111 1e-19
seq42 100 2e-16
>seq16
Length=1327714
Score = 123 bits (136), Expect = 2e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| || || ||||| | |||||||| | ||| || ||||
Sbjct 332282 ACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATCGACAATGTCAAGTCC 332223
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
||||| ||||||||||| || ||||||||||| |||||||| || || || || |||||
Sbjct 332222 AAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTGATCTTCGCTGGCAAG 332163
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | |||||| |||||| |||||||||||||||| || || || || || | |||
Sbjct 332162 CAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACTCTTCAT 332103
Query 22423 TTAGTTTTGCG 22433
| || ||||
Sbjct 332102 CTCGTCCTGCG 332092
>seq4
Length=1888314
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || |||||||| ||||| || || || || ||||||| || || ||| | |
Sbjct 716342 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCG 716283
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || ||||| || |||||||| || |||||||| ||
Sbjct 716282 GACACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAG 716223
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | ||||| || || || || || | || || |||||| | || |||||||||
Sbjct 716222 CAGAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAAC 716163
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||| || || || | ||||| ||| | || | || || |||
Sbjct 716162 ATTCAAAAGGAGTCGACTCTTCATTTGGTTCTTCGTCTCCGAGGTGGT 716115
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||||||||| || ||| | |||||||| | ||| | | ||
Sbjct 716546 ACTGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAACGTGAAGTCG 716487
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| |||||||| || ||||| || || ||||||||||| || || ||||||||
Sbjct 716486 AAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAACAACGTCTCATCTTCGCCGGCAAG 716427
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | |||||| ||| || ||||||| || ||||| || || || |||||| | ||
Sbjct 716426 CAACTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAGGAGTCCACCCTTCAC 716367
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| || | || | || ||||||
Sbjct 716366 TTGGTGCTCCGTCTCCGTGGAGGT 716343
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || ||||| ||||| || || | || | |||||||| | |
Sbjct 716114 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAGTCTTCG 716055
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || ||||||||||||||||| |||||||| ||
Sbjct 716054 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCCGACCAG 715995
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||| || || || || |||||| || || | |||||||||
Sbjct 715994 CAGCGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGGCGTACACTGAGTGATTACAAC 715935
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428
|| ||||| || || || | ||||| |||
Sbjct 715934 ATCCAAAAGGAGTCGACTCTCCATTTGGTT 715905
Score = 109 bits (120), Expect = 5e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||||||||| || || || | |||||| | || | ||||
Sbjct 716830 ACCGGAAAGACCATCACTCTTGAGGTTGAGTCCTCGGATACCATCGATAACGTCAAGAGC 716771
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||||||||||||||| || |||||||| |||||||| | || || || || ||
Sbjct 716770 AAGATTCAAGACAAGGAGGGAATCCCACCCGACCAACAACGCTTGATCTTCGCTGGAAAG 716711
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| |||||| | || ||||| |||||||| || || || ||| | |||
Sbjct 716710 CAGCTTGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCTACCCTCCAT 716651
>seq37
Length=479966
Score = 111 bits (122), Expect = 1e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| |||||||| || || || || || || ||||| | || || ||| | |
Sbjct 404295 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAATCTTCG 404236
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || ||||| || ||||||||||| |||||||| ||
Sbjct 404235 GACACTATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAG 404176
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | ||||| ||||| | || || | || ||| ||||||| | ||||| ||||||
Sbjct 404175 CAGAGACTTATTTTTGCTAGTAAGCAACTTGAAGATAGCCGCACCCTATCCGACTACAAC 404116
Query 22399 ATTCAAAAAGAATC 22412
|||||||| || ||
Sbjct 404115 ATTCAAAAGGAGTC 404102
>seq26
Length=969302
Score = 111 bits (122), Expect = 1e-19
Identities = 123/164 (75%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||||||||| || || || ||||||| | ||| || ||||
Sbjct 292107 ACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACTATCGACAATGTCAAGTCC 292166
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| |||||||| || ||||| ||| | || |||||||| ||
Sbjct 292167 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCCGGAAAG 292226
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| | || ||| ||| ||| |||||||||| ||||| |||||
Sbjct 292227 CAACTTGAAGATGGCCGTACCCTCTCCGATTATAACATCCAAAA 292270
>seq42
Length=298824
Score = 100 bits (110), Expect = 2e-16
Identities = 279/424 (66%), Gaps = 7/424 (2%)
Strand=Plus/Plus
Query 129985 GGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACC 130044
|| ||||||||| ||||| |||| | ||| ||||| ||||| || | ||| || | |
Sbjct 242769 GGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATC 242828
Query 130045 CACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTC--A 130102
||||||||||| || | ||| || ||| ||||| || || | | |||| |
Sbjct 242829 CACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTC-CTTGCCGTGATTC-TTTCGAA 242886
Query 130103 GTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCT 130162
| |||||| | ||| | | ||||||||||| || |||| ||| || || | || ||
Sbjct 242887 GATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTG 242946
Query 130163 TCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTG 130219
|| ||| || ||||||||||||| || | | |||||| ||||||| | ||| |
Sbjct 242947 GTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGG 243006
Query 130220 CCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGT 130279
| | ||||| | | || ||||| | ||||| | || ||| || |
Sbjct 243007 GGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGATTC 243066
Query 130280 TATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCG 130339
||||||| | || || || || || || || || |||| |||||| | |
Sbjct 243067 GATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATG 243126
Query 130340 TTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGGCCAATT 130399
| || || || || |||||||||| || || |||| | |||||||| || | | ||
Sbjct 243127 TGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTT 243186
Query 130400 GGGC 130403
||||
Sbjct 243187 GGGC 243190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727636804115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |