Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq4 188 1e-42
seq16 165 2e-35
seq26 143 5e-29
seq37 138 2e-27
seq42 86.0 1e-11
>seq4
Length=1888314
Score = 188 bits (208), Expect = 1e-42
Identities = 172/217 (79%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | |||||||| || |||||||| || ||||||||||| ||||||
Sbjct 716344 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 716403
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||| |||||||| ||||| | ||||||||| || |||
Sbjct 716404 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 716463
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| |||||||| | ||| ||| |||||||| || | ||||| ||
Sbjct 716464 ATGCCTTCCTTGTCCTGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACC 716523
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | |||||||| || || || |||||||||||||
Sbjct 716524 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGA 716560
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| || || || ||||| ||||||||||| |||||
Sbjct 715888 CCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTC 715947
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | |||||| || || ||||| || || || || | || || |||||||||||
Sbjct 715948 AGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGG 716007
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| ||||| | |||||| || |||||||| | || || |||
Sbjct 716008 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACT 716067
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| ||||| || | |||||||| || || |||||
Sbjct 716068 TCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| || || || ||||| ||||| ||||| ||||| ||
Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || ||||| | ||||| || ||||| || ||||| || |||||||||||
Sbjct 716176 AAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGG 716235
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || |||||||| | |||||| ||||||||||| | ||||| ||
Sbjct 716236 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACC 716295
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| || ||||| || | ||||| || || ||||||||
Sbjct 716296 TCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342
Score = 131 bits (144), Expect = 3e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | || || || ||||| || || ||||||||||| ||
Sbjct 716628 CCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAA 716687
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || | | |||||||||||||||
Sbjct 716688 AGGGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGG 716747
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||| ||||||| |||||||| || | || || ||
Sbjct 716748 ATTCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTATCGATGGTATCCGAGGACTCAACC 716807
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | |||||||| ||||| ||||
Sbjct 716808 TCAAGAGTGATGGTCTTTCCGGTGA 716832
>seq16
Length=1327714
Score = 165 bits (182), Expect = 2e-35
Identities = 168/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || || || |||| || | || || || ||||| || |||||||| ||||||||
Sbjct 332079 TCCACCACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 332138
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | ||||| || | ||||| || ||||| || || | |||||||||||||||
Sbjct 332139 GAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGG 332198
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
||| |||||||||||||| || || | |||||| |||||||| || | || || ||
Sbjct 332199 AATTCCTTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCAC 332258
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| | ||||| || || ||||||||||||||||||||
Sbjct 332259 CTCGAGTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297
>seq26
Length=969302
Score = 143 bits (158), Expect = 5e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
||||||||||||||||||||||| || | |||||||| | ||||| ||||| || ||
Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | |||||||| |||||||| || |||||||| || ||||| | |||||| |||
Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| || || | || || || || | |||||||| || ||||| ||||||||||||||
Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 292092
>seq37
Length=479966
Score = 138 bits (152), Expect = 2e-27
Identities = 147/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327
||||| ||||| ||||| || ||||| || || | | |||||| | ||||| | ||
Sbjct 404102 GACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGCA 404161
Query 68328 AATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387
|| || ||||| || ||||||||||| || || ||||| || |||||||| | |||||||
Sbjct 404162 AAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGACG 404221
Query 68388 GCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447
||||| ||||| | ||||| || ||||| ||||| || ||||| || | ||||||
Sbjct 404222 TTGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTTA 404281
Query 68448 ACGAATATCTGCAT 68461
|| || || |||||
Sbjct 404282 ACAAAGATTTGCAT 404295
>seq42
Length=298824
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 31419 GCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCA 31478
|| ||| ||| || |||| ||||||| |||||||| ||||||| | ||||||
Sbjct 242208 GCGGCATGGTAGATGGTCTCGAAGATTTGAATGTTGAGGTGCTTGGCCTCTGGAGAGTCG 242267
Query 31479 AAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGG 31538
|| || | || || ||||| | || ||||||||||||||| || | || ||
Sbjct 242268 AATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAGACCCTGGACACCAACGGCGATAGGT 242327
Query 31539 CGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTC 31598
|| |||| | ||| || |||| || ||||||| | ||| | |||| |||||| ||
Sbjct 242328 CGGTGGCGGAAGTTGCTTCTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATC 242387
Query 31599 TTGTCGAGGTTCTTG 31613
|||| | |||||||
Sbjct 242388 TTGTTCAAGTTCTTG 242402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621582060120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |