Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq42 210 4e-49
seq4 190 4e-43
>seq42
Length=298824
Score = 210 bits (232), Expect = 4e-49
Identities = 485/722 (67%), Gaps = 23/722 (3%)
Strand=Plus/Plus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747
|||| |||||||||||| ||||| || | ||||| |||||||| |||||||||
Sbjct 242487 GCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGCAGAGG 242546
Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807
|| || |||||| || || | || || ||| ||| |||||| || ||||||
Sbjct 242547 TTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATCCTTG 242606
Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867
|| ||||||||||| || |||||| ||| || | |||| | || |||||| |
Sbjct 242607 TAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGCTTT 242666
Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927
||||||| ||| ||||| |||| || || ||| || | ||| || ||||||
Sbjct 242667 TGCGCCTTGATGGTCTTGCGACCCTTACCTTCGCGCTCATACTGCTCGTAGAGAGCCTCG 242726
Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987
|| || ||| |||| || | | ||| |||||| |||||||| | | |||||
Sbjct 242727 AATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGGGCACATCAAAGTCCAC 242786
Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047
||||| | | || | || |||||| || || || ||||| ||||| | ||||||
Sbjct 242787 TCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGTAGAAGAGA 242846
Query 245048 TCCCTGGTCCTCTG--CTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAG 245104
|| | | ||| | ||| ||| ||| ||| ||||| | || || | | || |||
Sbjct 242847 TCAC--GAGCTCGGACCTCCTCCTTGCC-GTGATTCTTTCGAAGATCAAGGTACTCGAAG 242903
Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164
|| ||| ||||||| ||||| | |||| ||||| || || || |||||||| || ||
Sbjct 242904 ACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTGGTCGCTTGTTACCACCT 242963
Query 245165 TGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220
|||| || | | ||||| |||||||| || || | || || ||||||||
Sbjct 242964 TGGT----CAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGCCGTT 243019
Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC-- 245278
|||| || || || || |||||||| || | | | || || |||| ||
Sbjct 243020 CGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGA--TT--CGATGAACGT 243075
Query 245279 --ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336
| ||| | ||| || || | |||||| || | |||||| |||| | ||||| |
Sbjct 243076 TGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGA 243135
Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396
| || || || |||||| |||||||| || || || || || || || | |||||||
Sbjct 243136 TACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAG-TTGGGCTTGT 243194
Query 245397 GG 245398
||
Sbjct 243195 GG 243196
>seq4
Length=1888314
Score = 190 bits (210), Expect = 4e-43
Identities = 364/519 (70%), Gaps = 17/519 (3%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691
|| || |||||||||||||| |||||||| |||| ||||| | || | || | | ||
Sbjct 1224652 CCATGTATCAAGAAGAAGGCCGACTGGGCTGTCAAGTGGATTCA-AGACAAGAACTCTAC 1224594
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | | | || || || || ||||||||||||| ||||||||| || ||||
Sbjct 1224593 ATTTGCTCAACGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTT 1224534
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
||| |||||||||||| | ||| || ||| | ||| | || || |||||||| || |
Sbjct 1224533 CGCGTCCATCTTCTGGTTGAAGAAGCGTGGTCT-TATGGCTGGTCTTACCTTCTCCAATG 1224475
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
|||||||| | |||||||| || || | |||||||| ||||| || ||||| |
Sbjct 1224474 AACTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTC---TC 1224418
Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929
|| | | |||| |||| | ||| | |||| | | |||| || || || || |||
Sbjct 1224417 ACTTGAAGCAC-CGCCCAAGCAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAG 1224359
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA 42988
|| ||| | |||||| | || || | || || ||| | || | ||||||||| |
Sbjct 1224358 ATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTG-CACTCCTTGGCATGAACTCGAA 1224300
Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCT 43045
|| ||| |||| |||||| ||| |||||| || | ||| || |||| || |
Sbjct 1224299 TCTGATGAAGCAA-TACATCGAGTTCGTCGCTGATCGTCTGCTTCTTGCC-CTCGGCAAT 1224242
Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105
|| | ||||||| | | ||| || ||||||||||||||||||||| | | ||
Sbjct 1224241 GAGAAG-GTCTACAAGTCTGCCAACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGG 1224183
Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
|||||| ||||| || ||||||||||| | ||||||||
Sbjct 1224182 CAAGACTAACTTCTTTGAGAAGCGCGTTGGTGACTACCA 1224144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338361898960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |