Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq42 210 4e-49 seq4 190 4e-43 >seq42 Length=298824 Score = 210 bits (232), Expect = 4e-49 Identities = 485/722 (67%), Gaps = 23/722 (3%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||||||||| ||||| || | ||||| |||||||| ||||||||| Sbjct 242487 GCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGCAGAGG 242546 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || |||||| || || | || || ||| ||| |||||| || |||||| Sbjct 242547 TTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATCCTTG 242606 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||||||||||| || |||||| ||| || | |||| | || |||||| | Sbjct 242607 TAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGCTTT 242666 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||||||| ||| ||||| |||| || || ||| || | ||| || |||||| Sbjct 242667 TGCGCCTTGATGGTCTTGCGACCCTTACCTTCGCGCTCATACTGCTCGTAGAGAGCCTCG 242726 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 || || ||| |||| || | | ||| |||||| |||||||| | | ||||| Sbjct 242727 AATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGGGCACATCAAAGTCCAC 242786 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 ||||| | | || | || |||||| || || || ||||| ||||| | |||||| Sbjct 242787 TCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGTAGAAGAGA 242846 Query 245048 TCCCTGGTCCTCTG--CTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 || | | ||| | ||| ||| ||| ||| ||||| | || || | | || ||| Sbjct 242847 TCAC--GAGCTCGGACCTCCTCCTTGCC-GTGATTCTTTCGAAGATCAAGGTACTCGAAG 242903 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 || ||| ||||||| ||||| | |||| ||||| || || || |||||||| || || Sbjct 242904 ACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTGGTCGCTTGTTACCACCT 242963 Query 245165 TGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 |||| || | | ||||| |||||||| || || | || || |||||||| Sbjct 242964 TGGT----CAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGCCGTT 243019 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC-- 245278 |||| || || || || |||||||| || | | | || || |||| || Sbjct 243020 CGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGA--TT--CGATGAACGT 243075 Query 245279 --ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 | ||| | ||| || || | |||||| || | |||||| |||| | ||||| | Sbjct 243076 TGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGA 243135 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 | || || || |||||| |||||||| || || || || || || || | ||||||| Sbjct 243136 TACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAG-TTGGGCTTGT 243194 Query 245397 GG 245398 || Sbjct 243195 GG 243196 >seq4 Length=1888314 Score = 190 bits (210), Expect = 4e-43 Identities = 364/519 (70%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || || |||||||||||||| |||||||| |||| ||||| | || | || | | || Sbjct 1224652 CCATGTATCAAGAAGAAGGCCGACTGGGCTGTCAAGTGGATTCA-AGACAAGAACTCTAC 1224594 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || || || ||||||||||||| ||||||||| || |||| Sbjct 1224593 ATTTGCTCAACGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTT 1224534 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||||||| | ||| || ||| | ||| | || || |||||||| || | Sbjct 1224533 CGCGTCCATCTTCTGGTTGAAGAAGCGTGGTCT-TATGGCTGGTCTTACCTTCTCCAATG 1224475 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 |||||||| | |||||||| || || | |||||||| ||||| || ||||| | Sbjct 1224474 AACTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTC---TC 1224418 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 || | | |||| |||| | ||| | |||| | | |||| || || || || ||| Sbjct 1224417 ACTTGAAGCAC-CGCCCAAGCAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAG 1224359 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA 42988 || ||| | |||||| | || || | || || ||| | || | ||||||||| | Sbjct 1224358 ATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTG-CACTCCTTGGCATGAACTCGAA 1224300 Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCT 43045 || ||| |||| |||||| ||| |||||| || | ||| || |||| || | Sbjct 1224299 TCTGATGAAGCAA-TACATCGAGTTCGTCGCTGATCGTCTGCTTCTTGCC-CTCGGCAAT 1224242 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 || | ||||||| | | ||| || ||||||||||||||||||||| | | || Sbjct 1224241 GAGAAG-GTCTACAAGTCTGCCAACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGG 1224183 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||| ||||| || ||||||||||| | |||||||| Sbjct 1224182 CAAGACTAACTTCTTTGAGAAGCGCGTTGGTGACTACCA 1224144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338361898960