Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-24 seq26 120 7e-22 seq12 84.2 5e-11 >seq16 Length=1327714 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || |||||||||| || || || ||||| || || |||| Sbjct 332079 TCCACCACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 332138 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || || | ||| || || ||||||||||| || ||||| ||| Sbjct 332139 GAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGG 332198 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || || |||||||| | || || || || || | |||| || || || Sbjct 332199 AATTCCTTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCAC 332258 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 ||||| ||||| ||||| || || || ||||||||||| Sbjct 332259 CTCGAGTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297 >seq26 Length=969302 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| ||||| |||| ||| || || || ||||| | ||| ||||| || |||||| Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||||||| ||| ||||| || || |||||||| || | || || || || Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 |||| |||| || || || || || ||||| ||||| || || || ||||||||||| Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 292092 >seq12 Length=1482706 Score = 84.2 bits (92), Expect = 5e-11 Identities = 181/266 (68%), Gaps = 10/266 (4%) Strand=Plus/Plus Query 325387 CAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTG 325446 ||| ||||||| ||| || || ||| ||| || ||||| | ||| ||| || Sbjct 867336 CAAGCAGTTGACGTTGTTTGAGCCAACAAAATTTTGAGCAAGACCAATGATAGTCATATG 867395 Query 325447 CAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGC 325506 || ||| ||||| || || || |||||| ||| ||| ||||||||||| || | | Sbjct 867396 CATAGAAGCTTCACCGTGATGGTAGGCGGTATTCTCCCCAACGTAACCGGCCAATTCAAC 867455 Query 325507 AACCTTCACGTCGGTCGTCAA-ATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAG 325565 ||||||| ||| | ||| ||| |||||||| | | | || || || | || Sbjct 867456 CACCTTCATGTC-ACGGACAAGATTACGCTTGAAGCAAGCAAACATGACCTTTCTCTGTC 867514 Query 325566 AAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGA----G 325621 ||| ||||||||||||| ||| ||||||||| ||| |||| || | || | | Sbjct 867515 CAGGCTTGAAACCATCAAGGACAGACGGAATGGATCG---AAGATTGT-CAGCCATGCTG 867570 Query 325622 AACAAAATAAGTTCCTTGTCGATGAA 325647 || | ||| |||||||| | || ||| Sbjct 867571 AAGAGAATCAGTTCCTTATTGACGAA 867596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653326883138