Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq16 129 1e-24
seq26 120 7e-22
seq12 84.2 5e-11
>seq16
Length=1327714
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| ||||| | || |||||||||| || || || ||||| || || ||||
Sbjct 332079 TCCACCACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 332138
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
||| ||||| || || || | ||| || || ||||||||||| || ||||| |||
Sbjct 332139 GAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGG 332198
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|||||||| || || |||||||| | || || || || || | |||| || || ||
Sbjct 332199 AATTCCTTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCAC 332258
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
||||| ||||| ||||| || || || |||||||||||
Sbjct 332259 CTCGAGTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297
>seq26
Length=969302
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||| ||||| |||| ||| || || || ||||| | ||| ||||| || ||||||
Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
| ||||||||| ||| ||||| || || |||||||| || | || || || ||
Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|||| |||| || || || || || ||||| ||||| || || || |||||||||||
Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 292092
>seq12
Length=1482706
Score = 84.2 bits (92), Expect = 5e-11
Identities = 181/266 (68%), Gaps = 10/266 (4%)
Strand=Plus/Plus
Query 325387 CAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTG 325446
||| ||||||| ||| || || ||| ||| || ||||| | ||| ||| ||
Sbjct 867336 CAAGCAGTTGACGTTGTTTGAGCCAACAAAATTTTGAGCAAGACCAATGATAGTCATATG 867395
Query 325447 CAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGC 325506
|| ||| ||||| || || || |||||| ||| ||| ||||||||||| || | |
Sbjct 867396 CATAGAAGCTTCACCGTGATGGTAGGCGGTATTCTCCCCAACGTAACCGGCCAATTCAAC 867455
Query 325507 AACCTTCACGTCGGTCGTCAA-ATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAG 325565
||||||| ||| | ||| ||| |||||||| | | | || || || | ||
Sbjct 867456 CACCTTCATGTC-ACGGACAAGATTACGCTTGAAGCAAGCAAACATGACCTTTCTCTGTC 867514
Query 325566 AAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGA----G 325621
||| ||||||||||||| ||| ||||||||| ||| |||| || | || | |
Sbjct 867515 CAGGCTTGAAACCATCAAGGACAGACGGAATGGATCG---AAGATTGT-CAGCCATGCTG 867570
Query 325622 AACAAAATAAGTTCCTTGTCGATGAA 325647
|| | ||| |||||||| | || |||
Sbjct 867571 AAGAGAATCAGTTCCTTATTGACGAA 867596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653326883138
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |