Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 102 2e-16 seq12 84.2 5e-11 >seq4 Length=1888314 Score = 102 bits (112), Expect = 2e-16 Identities = 173/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 |||| || ||||| || || | || | || ||| | || ||| |||| || | Sbjct 1224378 TCATTACCGAAGCTGTCGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCAC 1224319 Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622 | ||||||||||||| | || ||| || |||||||| ||||| || || || | Sbjct 1224318 TCCTTGGCATGAACTCGAATCTGATGAAGCAATACATCGAGTTCGTCGCTGATCGTCTGC 1224259 Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682 | | || || || ||||||| || ||||| || ||||| |||| |||||||||| Sbjct 1224258 TTCTTGCCCTCGGCAATGAGAAGGTCTACAAGTCTGCCAACCCATTTGACTTTATGGAGA 1224199 Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCC 243742 ||| ||||| || || ||||||||||| || ||||| || |||| || ||| Sbjct 1224198 ACATCTCGCTCGCTGGCAAGACTAACTTCTTTGAGAAGCGCGTTGGTGACTACCAAAAAG 1224139 Query 243743 CTGGTGTGATG 243753 ||||||| ||| Sbjct 1224138 CTGGTGTCATG 1224128 >seq12 Length=1482706 Score = 84.2 bits (92), Expect = 5e-11 Identities = 181/266 (68%), Gaps = 10/266 (4%) Strand=Plus/Plus Query 297508 CAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTG 297567 ||| ||||||| ||| || || ||| ||| || ||||| | ||| ||| || Sbjct 867336 CAAGCAGTTGACGTTGTTTGAGCCAACAAAATTTTGAGCAAGACCAATGATAGTCATATG 867395 Query 297568 CAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGC 297627 || ||| ||||| || || || |||||| ||| ||| ||||||||||| || | | Sbjct 867396 CATAGAAGCTTCACCGTGATGGTAGGCGGTATTCTCCCCAACGTAACCGGCCAATTCAAC 867455 Query 297628 AACCTTCACGTCGGTCGTCAA-ATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAG 297686 ||||||| ||| | ||| ||| |||||||| | | | || || || | || Sbjct 867456 CACCTTCATGTC-ACGGACAAGATTACGCTTGAAGCAAGCAAACATGACCTTTCTCTGTC 867514 Query 297687 AAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGA----G 297742 ||| ||||||||||||| ||| ||||||||| ||| |||| || | || | | Sbjct 867515 CAGGCTTGAAACCATCAAGGACAGACGGAATGGATCG---AAGATTGT-CAGCCATGCTG 867570 Query 297743 AACAAAATAAGTTCCTTGTCGATGAA 297768 || | ||| |||||||| | || ||| Sbjct 867571 AAGAGAATCAGTTCCTTATTGACGAA 867596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878996723850