Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq42 178 2e-39 seq4 140 4e-28 >seq42 Length=298824 Score = 178 bits (196), Expect = 2e-39 Identities = 1125/1765 (64%), Gaps = 76/1765 (4%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || || || || ||| ||||||| || | ||||| || Sbjct 241605 CGGAGATAGTACATGCCAGTTTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTGGTG 241664 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-AA 113715 | |||| | ||| ||| | |||| | |||||| ||| ||||| || ||| || Sbjct 241665 ATCTTGCCCATTGTGGGATCCTTCATGTGAATGTTCATCGATTGTGATTGGTCAATGTAA 241724 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTT 113773 || ||||| || || ||||| | | | | ||| ||| ||||||| || || Sbjct 241725 GCA-CCACGGTCAGCGGCCATTTGGACGA--TGGTTCGCTGTGAGATTTCCCAAACGGTC 241781 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| || ||| |||||| ||||||| | ||| || || || || ||||| | Sbjct 241782 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTGGGGATGTTCTGAATCGATCCACCATC- 241840 Query 113834 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 | | |||| | | |||||| | | ||||||||||| || | ||||||| Sbjct 241841 --GGCAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATGTCAACAAGATCCTTG 241898 Query 113891 ACGAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATA 113947 | | ||| | |||| || ||||| || || || || | ||| ||||| Sbjct 241899 AGCAACCATGGGT--TGACGACTTGGAACTCGCCAGCAAGAACACGACG-AGAGTAGATG 241955 Query 113948 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGGAGGCTGT 114006 |||| ||| ||||||||||||||||||||| | ||||| ||||| |||| ||| || Sbjct 241956 TTGGACGTATATGGCTCAAAGCACTCATTG-AAGCCAAGAATTTGACTGGTGCTGGCAGT 242014 Query 114007 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 114066 ||||| || || | || | ||| || || ||||| | || | | || | ||| | Sbjct 242015 TGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACCATGTTGCTTGATTTTCTGCTTCAA 242074 Query 114067 GGCGTCCCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 | |||||| || || || || | || | || |||||||||| |||| | Sbjct 242075 GCTGTCCCAATCCCAG-AGATCTGTTGGAGTAACACC---CCACATATCATACTGCAACT 242130 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATT 114182 || | |||||| || || |||||||||||||| || | ||| ||||||| || | | Sbjct 242131 CGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATAAGTGCCATCAACCTTGGCAAGCT 242190 Query 114183 CGGAGCT--CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGC 114240 | | || || ||| || || || || || ||||| || || || || | Sbjct 242191 C--AACTGAAGCAGTGAGTGCGGCATGGTAGATGGTCTCGAAGATTTGAATGTTGAGGTG 242248 Query 114241 CTTGGCCTCGTCGGAATCAAACGCGAGTCG-GCACAAAATAAATACATCCGCGAGACCTT 114299 ||||||||| || || || | || || | || ||| |||| || ||||| | Sbjct 242249 CTTGGCCTCTGGAGAGTCGAATGGAAGACGAAGAGCCAAGAAA-GCATCAGCAAGACCCT 242307 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC-TCCACGGGA 114358 ||||||| | | | || || || || | | | | | | || | || || || Sbjct 242308 GGACACCAACGGCGATAGGTCGGTGGCGGA-AGTTGCTTCTCTTGGCTTCGGGAACAGGG 242366 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC--CTTTG-TGATTTCA 114415 ||| | || ||| || | | | || | || | ||||||| ||| | || ||| Sbjct 242367 TAATAGTTGACATCAATGATCTTGTTCAAGTTCT---TGACAACGACTTGGCAGACTTCG 242423 Query 114416 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA--TTGACATACTTAGGAAGGGCGA 114473 ||||| | | | | ||| || ||| || | |||| | |||||| |||||||||| | Sbjct 242424 TGAAGTCTCTGGAAGTCATAAGTGC-CGT-TGTTCATGTCGACATAGGTAGGAAGGGCAA 242481 Query 114474 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 114533 ||| |||| || || || | |||||| | || |||||| | ||| || || | Sbjct 242482 GTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGC 242541 Query 114534 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 114593 | | || || || ||||| || | ||||| || || |||| |||| || |||| Sbjct 242542 AGAGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCAT 242601 Query 114594 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 114653 |||||||||||||| | || | || ||||| || || | || || || | | ||||| Sbjct 242602 CCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGA 242661 Query 114654 -CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTG 114706 | | ||| || | ||| ||| || |||| ||| ||| |||| | Sbjct 242662 GCTTTTGCGCCTTG----ATGGTCTTG---CGACCCTTACCTTCGCGCTCATACTGCTCG 242714 Query 114707 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 114766 ||||| || || || || || || | | || | | ||||| || || ||||| Sbjct 242715 TAGAGAGCCTCGAATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGGGCAC 242774 Query 114767 AAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGA 114826 | | || ||| | ||| || ||||| ||||||||||| || || || ||||| || Sbjct 242775 ATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGG 242834 Query 114827 GCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 114886 || |||||||||| ||| || | || || | || ||||| || | || | Sbjct 242835 GCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAAGG 242894 Query 114887 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG- 114945 | || | || ||| |||||||| || || || || | |||| | | ||| | || Sbjct 242895 TACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAG-CACCT--GGTCGC 242951 Query 114946 -----ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATG 115000 |||| | |||| || || | || ||| || || || || ||||| || | | Sbjct 242952 TTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACG 243011 Query 115001 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACT-TATTGGCTCTGACATCATG 115059 || || | || | |||||||| || ||| || || | || | || ||| Sbjct 243012 ATGCCGTTCGAGTTACCATTTGTTCCTGCAAT-GTAGGCTCCGGTAGCGCGGATTCGATG 243070 Query 115060 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 115119 | || | ||||| || || || ||| || || ||||| | | | || | Sbjct 243071 AACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTGTC 243130 Query 115120 GTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGG 115179 |||||| |||||||| ||| |||| | ||| |||||| || || | ||| || Sbjct 243131 GTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTG-GG 243189 Query 115180 CCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGAC 115237 | | ||| |||||||| |||||| ||||| | || || |||| || | |||||| Sbjct 243190 CTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTC-TGGGAC 243248 Query 115238 ATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 115297 ||| || ||| ||||| | | || || ||||| |||||||| |||| | || Sbjct 243249 ATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCTACT 243308 Query 115298 CGCATAAACATGTATTG-GGGTGTT 115321 ||||||| ||||| ||| ||| ||| Sbjct 243309 CGCATAATCATGTGTTGTGGGCGTT 243333 >seq4 Length=1888314 Score = 140 bits (154), Expect = 4e-28 Identities = 344/515 (67%), Gaps = 10/515 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| |||||||| |||||||| ||||| || | | ||| |||||||| Sbjct 1224146 GTAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTTCTCCAT 1224205 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG-AGAC 125876 ||| ||||||||||| || || | | || || | | || | |||| Sbjct 1224206 AAAGTCAAATGGGTTGGCAGACTTGTAGACC-TTCTCATTGCCGAGGGCAAGAAGCAGAC 1224264 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | |||| |||| ||||| | |||| | |||||||| || | ||| || Sbjct 1224265 GATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAGGAGTGCAC 1224324 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || || || || | |||| | | |||||| || || ||||| | || | | | Sbjct 1224325 AAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAATGACGTCTT 1224384 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCT 126055 | | | | | | || | | || |||| |||||| ||||| || Sbjct 1224385 GGACAGCTTGCTTGCTTGGGCGGT-GCTTCAAGTGAGAGAAGAGAAGGCAAGCAAAGTCG 1224443 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 |||||||||||||||||| |||||||||||||| |||||| || || | ||| ||| Sbjct 1224444 GTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGCCATAAGA 1224503 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 || ||||||||||||||||| || | || ||||| ||||||||| ||||| || Sbjct 1224504 CCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCACTGAAGAAGATACCCTCGACG 1224563 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACTTC 126232 ||||| || | |||||| | |||||| | || || |||| || |||||| Sbjct 1224564 GCGGCGAATGCGACGAGACGTTGAGCAAATG---TAGAGTTCTTGTCTTGAATCCACTTG 1224620 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 | ||||| | ||||| |||| |||||| || || Sbjct 1224621 ACAGCCCAGTCGGCCTTCTTCTTGATACATGGAAC 1224655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353069848680