Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4 105 7e-18 seq16 100 3e-16 seq37 82.4 8e-11 >seq4 Length=1888314 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| ||||| || ||||||||||||||||||| | ||||| |||| Sbjct 716130 AAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTC 716189 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| ||||| || || | || || | |||||||||||| || || || || || || Sbjct 716190 TTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATC 716249 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || | || || || | ||| | || Sbjct 716250 CTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGT 716309 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||||||| || || || || ||||| Sbjct 716310 CTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| ||||||||||| | || ||| | || || | ||||| || Sbjct 715918 GTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGCTTACCA 715977 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | |||||||||||||| || || || || || ||||| || || ||| Sbjct 715978 GCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTCGACTTG 716037 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | |||||||| | || | |||||| ||||||||||| Sbjct 716038 ACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTC 716097 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 716098 TTGACAAAGATTTGCAT 716114 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || ||||| | || || || || |||||||| ||||| | Sbjct 716627 ACCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGA 716686 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| ||||||||||| || || | || | || || |||||||| || Sbjct 716687 AAGGGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGG 716746 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || ||||| || || ||| || || | ||||| || || || Sbjct 716747 GATTCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTATCGATGGTATCCGAGGACTCAAC 716806 Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419 || | ||| | |||||| ||||| Sbjct 716807 CTCAAGAGTGATGGTCTTTCCGGT 716830 >seq16 Length=1327714 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || || || ||||||||||| | || ||||| | || Sbjct 332095 AGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 332154 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||| || | || || || || |||||||| ||||||||||| || ||| Sbjct 332155 TCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT 332214 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | ||||| | ||||| || | || | ||| Sbjct 332215 TGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGATAGTC 332274 Query 64412 TTGCCGGTCAAAGTTTTTACGAA 64434 ||||| || | || || ||||| Sbjct 332275 TTGCCCGTGAGGGTCTTGACGAA 332297 >seq37 Length=479966 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 64249 CGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGC 64308 ||| || |||||||||||||| || | | |||||| |||||||| ||||| | || Sbjct 404101 CGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGC 404160 Query 64309 ATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 | |||| || | |||||||||||| || || || || || || || || || ||| || Sbjct 404161 AAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGAC 404220 Query 64369 AACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTT 64428 || | || || | || || || | ||| | ||||| || ||||| || || Sbjct 404221 GTTGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTT 404280 Query 64429 TACGAAAATTTGCAT 64443 || || |||||||| Sbjct 404281 AACAAAGATTTGCAT 404295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644356565240