Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq42 181 1e-40 >seq42 Length=298824 Score = 181 bits (200), Expect = 1e-40 Identities = 602/922 (65%), Gaps = 12/922 (1%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 |||||| | ||||||| |||||| ||||| ||| || ||||||||| | ||||| Sbjct 243403 AATTACCAATACTTTGGCTTCAAGACTCTCGAGCGATCATACCTCCTCCGCCTCAATGGC 243344 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | | | ||| || || || || || | ||||| || || |||| |||||||| | Sbjct 243343 AAGATCTGCGAACGCCCACAACACATGATTATGCGAGTAGCAGTCGGCATTCACGGTGAA 243284 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGC 93893 || || | || | | | | || ||| | ||| | | || |||| | Sbjct 243283 GATATCGAGGCTGCGATTGAGACATACAATCTGATGTCCCAGAAGTGCTTCACGCATG-C 243225 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 |||| || || ||| || || || || | || | ||||| |||||||| | Sbjct 243224 TTCCCCAACTCTCTTCGCTGCTGGTACTCCACAAGCCCAACTCTCTTCATGTTTCCTTGT 243165 Query 93954 -GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 ||| | |||| ||| ||| ||| || | ||||| | ||| || || | | Sbjct 243164 CGAC-ATGAAGGAGGACAGTATCGACGGTATCTACGACACATTGAAGACTTGCGCCATGA 243106 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCA-CGACGTACGTGCCAGGGGTTCC 94071 | || || | || || ||||| || ||| || || ||| | || || | || || Sbjct 243105 TTTCCAAGAATGCTGGTGGAATTGGCCTCAACGTTCATCGAA-TCCGCGCTACCGGAGCC 243047 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| || || ||||| | ||| |||||| ||||||| |||||||| ||||||||| Sbjct 243046 TACATTGCAGGAACAAATGGTAACTCGAACGGCATCGTCCCCATGCTCCGAGTCTTCAAC 242987 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || || ||||| ||||| |||||| | | | ||| ||||||| ||||| Sbjct 242986 AACACTGCTCGTTACGTTGACCAAGGTGGTAACAAGCGACCAGGTGCTTTCGCTATCTAT 242927 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || || | | | | || || |||||||| |||||||| Sbjct 242926 CTTGAGCCATGGCACGCCGATGTCTTCGAGTACCTTGATCTTCGAAAGAATCACGGCAAG 242867 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | || | || ||||||||||| || ||| | || || ||||| ||||| Sbjct 242866 GAGGAGGTCCGAGCTCGTGATCTCTTCTACGCCCTGTGGATTCCTGATCTTTTCATGAAG 242807 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || || || || || |||| | | | || |||||||| || || || || | Sbjct 242806 CGAGTTGAAAAGAATGGCGAGTGGACTTTGATGTGCCCCAATGAGTGCCCAGGCTTGGCT 242747 Query 94372 GACGTTTGTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 || || | ||| || | || || || | || | | || | | ||| | || ||| Sbjct 242746 GATGTCTATGG--CGATGAATTCGAGGCTCTCTACGAGCAGTATG-AGCGCGAAGGTAAG 242690 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | ||| || | || ||||| ||| | ||| |||| | ||| ||| Sbjct 242689 GGTCGCAAGACCATCAAGGCGCAAAAGCTCTGGTACTCCATCCTGGAGGCTCAGACCGAG 242630 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | |||| ||| | | |||||| || |||| ||| ||||||| || | Sbjct 242629 ACTGGCAATCCCTTCATGCTTTACAAGGATGCTTGCAACAGAAAGAGCAACCAGAAGAAT 242570 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| ||| |||||||| || ||||| |||||||| ||||| | |||| || Sbjct 242569 CTCGGTACCATCCGAAGCTCGAACCTCTGCACTGAGATTGTTGAGTACTGTGCTCCAGAT 242510 Query 94609 GAGATTGCTGTGTGTAACCTGG 94630 ||| |||| || || ||| ||| Sbjct 242509 GAGGTTGCCGTCTGCAACTTGG 242488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722760933160