Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq42 116 4e-21
seq4 107 2e-18
seq16 86.0 6e-12
>seq42
Length=298824
Score = 116 bits (128), Expect = 4e-21
Identities = 425/651 (65%), Gaps = 21/651 (3%)
Strand=Plus/Plus
Query 153813 CCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGG 153872
|| |||| ||| || ||||||| || ||| || || ||||| ||| || || | |
Sbjct 242694 CCTTCGCGCTCATACTGCTCGTAGAGAGCCTCGAATTCATCGCCATAGACATCAGCCAAG 242753
Query 153873 CCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGC--- 153929
|| || |||| || || ||||||| | |||| ||| | || | ||||
Sbjct 242754 CCTGGGCACTCATTGGGGCACATCAAAGTCCAC---TCGCCATTCTTTTCAACTCGCTTC 242810
Query 153930 ATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCG 153989
||||| ||||| || | ||| || ||||| | ||| || || || | |||||| |
Sbjct 242811 ATGAAAAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTG 242870
Query 153990 CCCATGTTGCGTTTC--AGATTGAGC-ACGCTATAGATGTCGGCGTGCCAGGGTTCAATG 154046
|| || | | |||| |||| || || | | ||| ||||||||||| || ||||
Sbjct 242871 CCG-TGATTC-TTTCGAAGATCAAGGTACTCGA-AGACATCGGCGTGCCATGGCTCAAGA 242927
Query 154047 TAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTG 154103
|||| || | |||||| ||||| || || || || |||| || | | |||
Sbjct 242928 TAGATAGCGAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTG 242987
Query 154104 TTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTG 154163
|||||||| || | |||||| | | |||| | | | | || || || || | |
Sbjct 242988 TTGAAGACTCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAG 243047
Query 154164 CTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATG 154223
||| ||||| | | |||| ||||| | |||||| || || | | ||| || ||
Sbjct 243048 GCTCCGGTAGCGCGGATTCGATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATC 243107
Query 154224 GCAGCGCA-GTCGCCCA-GCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGA 154281
||||| ||| | | | ||| |||||| |||||||| || || || | | |||
Sbjct 243108 ATGGCGCAAGTCTTCAATGTGTC--GTAGATACCGTCGATACTGTCCTCCTTCATGTCGA 243165
Query 154282 GCAAGAAACACGAACACATTTGCGGAATGCGC-GTTCCCGCCGAAAAGAGGGTGGGACTC 154340
| |||||| ||| | | ||| || || | || || || | ||||| || ||
Sbjct 243166 CAAGGAAACATGAAGAGAGTTG-GGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAA 243224
Query 154341 GCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCA 154400
|| ||||| || || ||| ||||| ||| || || || || | ||||||||
Sbjct 243225 GCATGCGTGAAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCT 243284
Query 154401 TCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCG 154451
|| ||||||||||||| || || ||||| | |||||| || || ||||||
Sbjct 243285 TCACCGTGAATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCG 243335
>seq4
Length=1888314
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||| ||||| | | ||||||||||| |||||||| || |||
Sbjct 715888 CCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTC 715947
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||| | ||| ||||| | | |||| | ||||| ||||| || ||
Sbjct 715948 AGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGG 716007
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || || | |||| || | |||||| | ||||||||
Sbjct 716008 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTG-TCAATGGTGTCCGAAGACTCCAC 716066
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || |||| ||| || ||||| || |||||
Sbjct 716067 TTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||| | ||| | ||| ||||| | | |||||||||||||||||||| || |
Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||| || ||||| ||||| | |||| || | ||| ||||| || ||
Sbjct 716176 AAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGG 716235
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || || || ||| | || | || |||| || | |||||| | || || |
Sbjct 716236 ATGCCCTCCTTATC-CTGAATCTTGGACTTGACATTG-TCGATGGTGTCCGAAGATTCAA 716293
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||||| ||| || ||||| ||||||||
Sbjct 716294 CCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342
Score = 82.4 bits (90), Expect = 8e-11
Identities = 124/174 (71%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724
|| || ||||||||| || | ||| | ||||||||||| || || |||||||||
Sbjct 1224319 CTCCTTGGCATGAACTCGAATCTGATGAAGCAATACATCGAGTTCGTCGCTGATCGTCTG 1224260
Query 52725 -TTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAA 52783
|| ||| ||||| | ||| || ||| || ||| || ||||| |||||| |
Sbjct 1224259 CTTCTTGC-CCTCGGCAATGAGAAGGTCTACAAGTCTGCCAACCCATTTGACTTTATGGA 1224201
Query 52784 CAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||| ||||| | |||||||| ||||| || |||||||| || || || ||
Sbjct 1224200 GAACATCTCGCTCGCTGGCAAGACTAACTTCTTTGAGAAGCGCGTTGGTGACTA 1224147
>seq16
Length=1327714
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||||| || | ||| | | |||||||| || |||||||| |||
Sbjct 332080 CCACCACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAG 332139
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||||| || || | |||| || || |||||||| || ||
Sbjct 332140 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGA 332199
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| |||||| || | |||| || | ||| |||| ||||||||
Sbjct 332200 ATTCCTTCCTTGTCTTGGATTTTGGACTTGACATTG-TCGATGGTATCGGAAGACTCCAC 332258
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605
||||| || | || || || || || || || || ||
Sbjct 332259 CTCGAGTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261959567120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |