Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq42 116 4e-21 seq4 107 2e-18 seq16 86.0 6e-12 >seq42 Length=298824 Score = 116 bits (128), Expect = 4e-21 Identities = 425/651 (65%), Gaps = 21/651 (3%) Strand=Plus/Plus Query 153813 CCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGG 153872 || |||| ||| || ||||||| || ||| || || ||||| ||| || || | | Sbjct 242694 CCTTCGCGCTCATACTGCTCGTAGAGAGCCTCGAATTCATCGCCATAGACATCAGCCAAG 242753 Query 153873 CCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGC--- 153929 || || |||| || || ||||||| | |||| ||| | || | |||| Sbjct 242754 CCTGGGCACTCATTGGGGCACATCAAAGTCCAC---TCGCCATTCTTTTCAACTCGCTTC 242810 Query 153930 ATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCG 153989 ||||| ||||| || | ||| || ||||| | ||| || || || | |||||| | Sbjct 242811 ATGAAAAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTG 242870 Query 153990 CCCATGTTGCGTTTC--AGATTGAGC-ACGCTATAGATGTCGGCGTGCCAGGGTTCAATG 154046 || || | | |||| |||| || || | | ||| ||||||||||| || |||| Sbjct 242871 CCG-TGATTC-TTTCGAAGATCAAGGTACTCGA-AGACATCGGCGTGCCATGGCTCAAGA 242927 Query 154047 TAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTG 154103 |||| || | |||||| ||||| || || || || |||| || | | ||| Sbjct 242928 TAGATAGCGAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTG 242987 Query 154104 TTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTG 154163 |||||||| || | |||||| | | |||| | | | | || || || || | | Sbjct 242988 TTGAAGACTCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAG 243047 Query 154164 CTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATG 154223 ||| ||||| | | |||| ||||| | |||||| || || | | ||| || || Sbjct 243048 GCTCCGGTAGCGCGGATTCGATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATC 243107 Query 154224 GCAGCGCA-GTCGCCCA-GCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGA 154281 ||||| ||| | | | ||| |||||| |||||||| || || || | | ||| Sbjct 243108 ATGGCGCAAGTCTTCAATGTGTC--GTAGATACCGTCGATACTGTCCTCCTTCATGTCGA 243165 Query 154282 GCAAGAAACACGAACACATTTGCGGAATGCGC-GTTCCCGCCGAAAAGAGGGTGGGACTC 154340 | |||||| ||| | | ||| || || | || || || | ||||| || || Sbjct 243166 CAAGGAAACATGAAGAGAGTTG-GGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAA 243224 Query 154341 GCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCA 154400 || ||||| || || ||| ||||| ||| || || || || | |||||||| Sbjct 243225 GCATGCGTGAAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCT 243284 Query 154401 TCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCG 154451 || ||||||||||||| || || ||||| | |||||| || || |||||| Sbjct 243285 TCACCGTGAATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCG 243335 >seq4 Length=1888314 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | ||||||||||| |||||||| || ||| Sbjct 715888 CCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTC 715947 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| | ||| ||||| | | |||| | ||||| ||||| || || Sbjct 715948 AGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGG 716007 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||| | |||||||| Sbjct 716008 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTG-TCAATGGTGTCCGAAGACTCCAC 716066 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||| || ||||| || ||||| Sbjct 716067 TTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| ||||| | | |||||||||||||||||||| || | Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || ||||| ||||| | |||| || | ||| ||||| || || Sbjct 716176 AAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGG 716235 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || ||| | || | || |||| || | |||||| | || || | Sbjct 716236 ATGCCCTCCTTATC-CTGAATCTTGGACTTGACATTG-TCGATGGTGTCCGAAGATTCAA 716293 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| ||| || ||||| |||||||| Sbjct 716294 CCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 Score = 82.4 bits (90), Expect = 8e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724 || || ||||||||| || | ||| | ||||||||||| || || ||||||||| Sbjct 1224319 CTCCTTGGCATGAACTCGAATCTGATGAAGCAATACATCGAGTTCGTCGCTGATCGTCTG 1224260 Query 52725 -TTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAA 52783 || ||| ||||| | ||| || ||| || ||| || ||||| |||||| | Sbjct 1224259 CTTCTTGC-CCTCGGCAATGAGAAGGTCTACAAGTCTGCCAACCCATTTGACTTTATGGA 1224201 Query 52784 CAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| ||||| | |||||||| ||||| || |||||||| || || || || Sbjct 1224200 GAACATCTCGCTCGCTGGCAAGACTAACTTCTTTGAGAAGCGCGTTGGTGACTA 1224147 >seq16 Length=1327714 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | ||| | | |||||||| || |||||||| ||| Sbjct 332080 CCACCACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAG 332139 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||| || || | |||| || || |||||||| || || Sbjct 332140 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGA 332199 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || | |||| || | ||| |||| |||||||| Sbjct 332200 ATTCCTTCCTTGTCTTGGATTTTGGACTTGACATTG-TCGATGGTATCGGAAGACTCCAC 332258 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605 ||||| || | || || || || || || || || || Sbjct 332259 CTCGAGTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261959567120