Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 125 7e-24 >seq4 Length=1888314 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||| ||||| || |||||||| | | Sbjct 715888 CCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTC 715947 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | || || ||||| |||||||||||||||| ||||| || Sbjct 715948 AGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGG 716007 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| ||| ||||| | || | |||||||| | ||| ||| Sbjct 716008 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACT 716067 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||||| ||| || ||||| || ||||| Sbjct 716068 TCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114 Score = 114 bits (126), Expect = 1e-20 Identities = 326/498 (65%), Gaps = 11/498 (2%) Strand=Plus/Minus Query 47085 AAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTG 47144 |||||||| ||||| | |||| ||| || || | ||| || | || ||||| | Sbjct 1224637 AAGGCCGACTGGGCTGTCAAGTGGATTCAAGACAAGAACTCTACATTTGCTCAACGTCTC 1224578 Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204 |||| |||||| ||||||||| |||||||| || ||| ||| | || || | Sbjct 1224577 GTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCTGG 1224518 Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264 |||| | || ||||| | || || || || ||| || || ||||| | ||| Sbjct 1224517 TTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTCTCGTGAC 1224458 Query 47265 GAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTACAACACTAGAGTCGAT-CAAAA 47320 || || || |||||| ||||||| || ||||| || |||| || | | || Sbjct 1224457 GAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTCT--CACTTGAAGCACCGCCCAA 1224400 Query 47321 GTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || | ||| ||| | || ||||||| |||| |||||| ||||| Sbjct 1224399 G-----CAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGCAAGAGTT 1224345 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || | |||||||| || | | | || |||||| || | |||||| | || Sbjct 1224344 CTTGACTGAGGCTCTTCCTTGTGCACTCCTTGGCATGAACTCGAATCTGATGAAGCAATA 1224285 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || ||||| || || ||||| || || || ||| | ||| | | Sbjct 1224284 CATCGAGTTCGTCGCTGATCGTCTGCTTCTTGCCCTCGGCAATGAGAAGGTCTACAAGTC 1224225 Query 47501 CGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGA 47560 | || ||||| || |||||| | ||||| ||||||| |||||||| ||||| || || Sbjct 1224224 TGCCAACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGGCAAGACTAACTTCTTTGA 1224165 Query 47561 GAAGCGCGTCGGCGAATA 47578 ||||||||| || || || Sbjct 1224164 GAAGCGCGTTGGTGACTA 1224147 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||| |||||||| |||||||| | Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || |||||| |||| | || |||||| ||||| || Sbjct 716176 AAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGG 716235 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| || || ||||| | |||| |||||||| | || || Sbjct 716236 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACC 716295 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| ||| || ||||| |||||||| Sbjct 716296 TCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500377993040