Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 7e-24
>seq4
Length=1888314
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||||| | || ||||| ||||| || |||||||| | |
Sbjct 715888 CCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTC 715947
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || | || || ||||| |||||||||||||||| ||||| ||
Sbjct 715948 AGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGG 716007
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| ||| ||| ||||| | || | |||||||| | ||| |||
Sbjct 716008 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACT 716067
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || ||||||| ||| || ||||| || |||||
Sbjct 716068 TCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114
Score = 114 bits (126), Expect = 1e-20
Identities = 326/498 (65%), Gaps = 11/498 (2%)
Strand=Plus/Minus
Query 47085 AAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTG 47144
|||||||| ||||| | |||| ||| || || | ||| || | || ||||| |
Sbjct 1224637 AAGGCCGACTGGGCTGTCAAGTGGATTCAAGACAAGAACTCTACATTTGCTCAACGTCTC 1224578
Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204
|||| |||||| ||||||||| |||||||| || ||| ||| | || || |
Sbjct 1224577 GTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCTGG 1224518
Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264
|||| | || ||||| | || || || || ||| || || ||||| | |||
Sbjct 1224517 TTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTCTCGTGAC 1224458
Query 47265 GAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTACAACACTAGAGTCGAT-CAAAA 47320
|| || || |||||| ||||||| || ||||| || |||| || | | ||
Sbjct 1224457 GAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTCT--CACTTGAAGCACCGCCCAA 1224400
Query 47321 GTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380
| | || | ||| ||| | || ||||||| |||| |||||| |||||
Sbjct 1224399 G-----CAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGCAAGAGTT 1224345
Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440
|| | |||||||| || | | | || |||||| || | |||||| | ||
Sbjct 1224344 CTTGACTGAGGCTCTTCCTTGTGCACTCCTTGGCATGAACTCGAATCTGATGAAGCAATA 1224285
Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500
|||||| || ||||| || || ||||| || || || ||| | ||| | |
Sbjct 1224284 CATCGAGTTCGTCGCTGATCGTCTGCTTCTTGCCCTCGGCAATGAGAAGGTCTACAAGTC 1224225
Query 47501 CGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGA 47560
| || ||||| || |||||| | ||||| ||||||| |||||||| ||||| || ||
Sbjct 1224224 TGCCAACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGGCAAGACTAACTTCTTTGA 1224165
Query 47561 GAAGCGCGTCGGCGAATA 47578
||||||||| || || ||
Sbjct 1224164 GAAGCGCGTTGGTGACTA 1224147
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||||| | || ||||| |||||||| |||||||| |
Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || || || || |||||| |||| | || |||||| ||||| ||
Sbjct 716176 AAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGG 716235
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||| ||| || || ||||| | |||| |||||||| | || ||
Sbjct 716236 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACC 716295
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || |||| ||| || ||||| ||||||||
Sbjct 716296 TCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500377993040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |