Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 118 2e-21 seq16 104 6e-17 seq37 89.7 1e-12 seq26 84.2 5e-11 >seq4 Length=1888314 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||||||||||||||| | |||||| || | |||||| | || ||||| || ||| Sbjct 716140 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCAAGTTGC 716199 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || |||||||| || | ||||||||| || || || || ||||||||||| Sbjct 716200 TTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGAATCTTG 716259 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || |||| |||||| | | ||| || |||| ||||| ||||| || || Sbjct 716260 GACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTTTCCAGTC 716319 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||| || ||||| || || Sbjct 716320 AAAGTCTTAACAAAGATCTG 716339 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||| ||||| | | ||| | ||||| Sbjct 716359 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCC 716418 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||||||||| || ||||| || ||| ||||| ||| Sbjct 716419 TCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 716478 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||| || | | ||| || || | ||||| ||| Sbjct 716479 TGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTC 716538 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || || || || || || Sbjct 716539 TTGCCAGTCAGGGTCTTGAC 716558 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||||||||||||||||| |||||| ||| || || | ||||| |||| ||| Sbjct 715912 TGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGC 715971 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| | ||||||||||| || || || || || || ||||| Sbjct 715972 TTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTC 716031 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || || | |||||| | | || || ||||| || || ||||| || || Sbjct 716032 GACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTC 716091 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||| || ||||| ||||| Sbjct 716092 AAAGTCTTGACAAAGATTTG 716111 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || ||||| || |||||||| || | ||| || |||| | || Sbjct 716634 CGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGTG 716693 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||||||||| |||||||| | || || ||||| || ||||| Sbjct 716694 CGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCCC 716753 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| |||| ||| || | | || || || | Sbjct 716754 TCCTTGTCTTGAATCTTGCTCTTGACGTTATCGATGGTATCCGAGGACTCAACCTCAAGA 716813 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 716814 GTGATGGTCTTTCCGGTGA 716832 >seq16 Length=1327714 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || |||||||||||||| |||| |||||| || | | ||| Sbjct 332086 CGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTG 332145 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || |||||||| || || || ||||| || ||||||| Sbjct 332146 CGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCT 332205 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| || |||| ||| || | | || || || | Sbjct 332206 TCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAGT 332265 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 ||||| ||||| |||||||| || || || || Sbjct 332266 GTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297 >seq37 Length=479966 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 199435 CGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGC 199494 |||||||||||| | ||||||||| | | || | | |||||| || ||||| | || Sbjct 404101 CGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGC 404160 Query 199495 GAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCAC 199554 || || || | ||||||||| || || || || ||||||||||| ||| || Sbjct 404161 AAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGAC 404220 Query 199555 GGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTT 199614 | |||| ||||| | | ||| || ||||| ||||| ||||| || || | || || Sbjct 404221 GTTGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTT 404280 Query 199615 CACAAAAATTTG 199626 ||||| ||||| Sbjct 404281 AACAAAGATTTG 404292 >seq26 Length=969302 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||| || || | | || | |||||||| || ||||||||||| |||| Sbjct 292272 CCTTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGA 292213 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||| |||||||| |||||| || ||||| ||||| ||| || | Sbjct 292212 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 292153 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| || || | | || || || | ||||| ||||| ||||| || || || || | Sbjct 292152 CGATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 292093 Query 199620 A 199620 | Sbjct 292092 A 292092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920527549757