Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 118 2e-21
seq16 104 6e-17
seq37 89.7 1e-12
seq26 84.2 5e-11
>seq4
Length=1888314
Score = 118 bits (130), Expect = 2e-21
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| ||||||||||||||||| | |||||| || | |||||| | || ||||| || |||
Sbjct 716140 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCAAGTTGC 716199
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| || |||||||| || | ||||||||| || || || || |||||||||||
Sbjct 716200 TTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGAATCTTG 716259
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| || |||| |||||| | | ||| || |||| ||||| ||||| || ||
Sbjct 716260 GACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTTTCCAGTC 716319
Query 199607 AGAGTTTTCACAAAAATTTG 199626
| ||| || ||||| || ||
Sbjct 716320 AAAGTCTTAACAAAGATCTG 716339
Score = 113 bits (124), Expect = 1e-19
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || |||||||| |||| ||| ||||| | | ||| | |||||
Sbjct 716359 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCC 716418
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||||||||||||||| || ||||| || ||| ||||| |||
Sbjct 716419 TCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 716478
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| |||| ||| || | | ||| || || | ||||| |||
Sbjct 716479 TGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTC 716538
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || || || || || ||
Sbjct 716539 TTGCCAGTCAGGGTCTTGAC 716558
Score = 100 bits (110), Expect = 7e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|||||||||||||||||||||| |||||| ||| || || | ||||| |||| |||
Sbjct 715912 TGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGC 715971
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| || || ||||| | ||||||||||| || || || || || || |||||
Sbjct 715972 TTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTC 716031
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| || || | |||||| | | || || ||||| || || ||||| || ||
Sbjct 716032 GACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTC 716091
Query 199607 AGAGTTTTCACAAAAATTTG 199626
| ||| || ||||| |||||
Sbjct 716092 AAAGTCTTGACAAAGATTTG 716111
Score = 84.2 bits (92), Expect = 5e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || ||||| || |||||||| || | ||| || |||| | ||
Sbjct 716634 CGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGTG 716693
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || ||||||||||| |||||||| | || || ||||| || |||||
Sbjct 716694 CGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCCC 716753
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| ||| ||| |||| ||| || | | || || || |
Sbjct 716754 TCCTTGTCTTGAATCTTGCTCTTGACGTTATCGATGGTATCCGAGGACTCAACCTCAAGA 716813
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 716814 GTGATGGTCTTTCCGGTGA 716832
>seq16
Length=1327714
Score = 104 bits (114), Expect = 6e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| || || |||||||||||||| |||| |||||| || | | |||
Sbjct 332086 CGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTG 332145
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || ||||| || |||||||| || || || ||||| || |||||||
Sbjct 332146 CGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCT 332205
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || || || ||| || |||| ||| || | | || || || |
Sbjct 332206 TCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAGT 332265
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620
||||| ||||| |||||||| || || || ||
Sbjct 332266 GTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297
>seq37
Length=479966
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 199435 CGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGC 199494
|||||||||||| | ||||||||| | | || | | |||||| || ||||| | ||
Sbjct 404101 CGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGC 404160
Query 199495 GAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCAC 199554
|| || || | ||||||||| || || || || ||||||||||| ||| ||
Sbjct 404161 AAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGAC 404220
Query 199555 GGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTT 199614
| |||| ||||| | | ||| || ||||| ||||| ||||| || || | || ||
Sbjct 404221 GTTGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTT 404280
Query 199615 CACAAAAATTTG 199626
||||| |||||
Sbjct 404281 AACAAAGATTTG 404292
>seq26
Length=969302
Score = 84.2 bits (92), Expect = 5e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||||| ||| || || | | || | |||||||| || ||||||||||| ||||
Sbjct 292272 CCTTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGA 292213
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | |||||| |||||||| |||||| || ||||| ||||| ||| || |
Sbjct 292212 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 292153
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| || || | | || || || | ||||| ||||| ||||| || || || || |
Sbjct 292152 CGATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 292093
Query 199620 A 199620
|
Sbjct 292092 A 292092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178920527549757
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |