Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4 104 3e-17 seq37 102 9e-17 >seq4 Length=1888314 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || || || ||| | || || | ||||| || || || Sbjct 715923 CTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGCTTACCAGCAAA 715982 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||||| || | | ||||||||| ||||||| ||||| | Sbjct 715983 GATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACATT 716042 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| |||| || ||||| || || |||| || || || Sbjct 716043 GTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGAC 716102 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 716103 AAAGATTTGCAT 716114 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||| || || | |||||| |||| || || ||||| || ||||| Sbjct 716151 CTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAA 716210 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||||| || | || |||||| ||| ||||| ||||| | Sbjct 716211 GATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATT 716270 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||||| || |||| ||||| || || || |||| || ||||| Sbjct 716271 GTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAAC 716330 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 716331 AAAGATCTGCAT 716342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || |||||||| ||||| || | || || || |||||||||||||| Sbjct 716379 CTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAA 716438 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | || ||||||||| |||||| ||| | ||| Sbjct 716439 GATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCGACTTCA-CGT 716497 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| ||||| || || | |||||||| ||||| ||||| || || | Sbjct 716498 TGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTGA 716557 Query 46581 C 46581 | Sbjct 716558 C 716558 >seq37 Length=479966 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||||||||| ||||| || || || ||||| | || || Sbjct 404104 CTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGCAAA 404163 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||||| || | | |||||| ||| ||||| ||||| ||| Sbjct 404164 AATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGA-CGT 404222 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||||| || |||| ||||| || || || |||| || |||| Sbjct 404223 TGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTTAA 404282 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 404283 CAAAGATTTGCAT 404295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237898350920