Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq4 104 3e-17
seq37 102 9e-17
>seq4
Length=1888314
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||| || || || ||| | || || | ||||| || || ||
Sbjct 715923 CTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGCTTACCAGCAAA 715982
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||||| || | | ||||||||| ||||||| ||||| |
Sbjct 715983 GATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACATT 716042
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || ||||| |||| || ||||| || || |||| || || ||
Sbjct 716043 GTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGAC 716102
Query 46582 AAAGATTTGCAT 46593
||||||||||||
Sbjct 716103 AAAGATTTGCAT 716114
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||||||||| || ||||| || || | |||||| |||| || || ||||| || |||||
Sbjct 716151 CTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAA 716210
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||||| || | || |||||| ||| ||||| ||||| |
Sbjct 716211 GATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATT 716270
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| ||||| || |||| ||||| || || || |||| || |||||
Sbjct 716271 GTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAAC 716330
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 716331 AAAGATCTGCAT 716342
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| || |||||||| ||||| || | || || || ||||||||||||||
Sbjct 716379 CTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAA 716438
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | || || ||||| | || | || ||||||||| |||||| ||| | |||
Sbjct 716439 GATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCGACTTCA-CGT 716497
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | || ||| ||||| || || | |||||||| ||||| ||||| || || |
Sbjct 716498 TGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTGA 716557
Query 46581 C 46581
|
Sbjct 716558 C 716558
>seq37
Length=479966
Score = 102 bits (112), Expect = 9e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||||||||| || |||||||||||||| ||||| || || || ||||| | || ||
Sbjct 404104 CTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGCAAA 404163
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||||| || | | |||||| ||| ||||| ||||| |||
Sbjct 404164 AATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGA-CGT 404222
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| ||||| || |||| ||||| || || || |||| || ||||
Sbjct 404223 TGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTTAA 404282
Query 46581 CAAAGATTTGCAT 46593
|||||||||||||
Sbjct 404283 CAAAGATTTGCAT 404295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237898350920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |