Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq16 116 4e-21 seq26 87.8 2e-12 >seq4 Length=1888314 Score = 131 bits (144), Expect = 2e-25 Identities = 195/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || | || ||||| | |||||||| |||||| || Sbjct 1224755 GTATGTGTCGATGAGAAGGGAGTATGTCTCGGAGTGGATATTCTCCATCATGATTTGGAA 1224814 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || ||||| | ||| || || | ||| |||||||||| || Sbjct 1224815 TCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCACCACTGAAGCGCTCGACCAAGTT 1224874 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| || || ||| || ||||| || || || ||||| |||||| | || Sbjct 1224875 CTCGTTGACAATTCCATCGGATGCAGCGAAGAATGCGAGGACGTGGGAGATGAAGTAACG 1224934 Query 133347 CTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||| || | | | ||||||| | ||||| || || || | ||| || Sbjct 1224935 CTCGTCGTCATTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTCGATAGATCAATCTCTTC 1224994 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || ||||||||||| || |||||||| Sbjct 1224995 GGCGGTCCAGAAAGACGCCTCGGCCTTCTTGTACAT 1225030 Score = 114 bits (126), Expect = 1e-20 Identities = 308/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| |||||| || || || || |||||||| || ||||| || || | Sbjct 1224128 CATGACACCAGCTTTTTGGTAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGC 1224187 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 | || ||| | |||||| || || |||||||| | |||||| ||| |||| Sbjct 1224188 GAGCGAGATGTTCTCCATAAAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTGCC 1224247 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || | | ||||| | || || |||||||||||||||||| ||| | |||| Sbjct 1224248 GA---GGGCAAGAAGCAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCG- 1224303 Query 132767 AATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | || | || || || |||| || || || || || | || |||||| || || Sbjct 1224304 AGTTCATGCCAAGGAGT-GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCG 1224362 Query 132826 ACCGCGTCGGTGACGATTTCCCTAAC-GCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884 || || ||||| | || || || || || ||| || || ||| ||| || Sbjct 1224363 ACAGCTTCGGTAATGACGTCTTGGACAGCTTGCTT-GCTTGGGCGGTGCTTCAAGTGAGA 1224421 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||| | | ||||||||||||| || | |||||||| | || |||||||| ||| Sbjct 1224422 GAAGAGAAGGCAAGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGA 1224481 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| || | || | ||| || || || || || | ||| || |||| ||||| || Sbjct 1224482 GAAGGTAAGACCAGCCATAAGACCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACC 1224541 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCG 133046 ||||||| ||||||||||| ||||| || || || || Sbjct 1224542 ACTGAAGAAGATACCCTCGACGGCGGCGAATGCGACGAGACG 1224583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || ||||| || | || || ||| | | Sbjct 716114 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAGTCTTCG 716055 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || || ||||||| Sbjct 716054 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCCGACCAG 715995 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || || |||| || | ||| || || | || |||||| Sbjct 715994 CAGCGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGGCGTACACTGAGTGATTACAAC 715935 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || |||||||| || ||| Sbjct 715934 ATCCAAAAGGAGTCGACTCTCCATTTGGTTCTCCGT 715899 >seq16 Length=1327714 Score = 116 bits (128), Expect = 4e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| || ||||| |||| || ||| | |||| | | | Sbjct 332297 TTCGTCAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATC 332238 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| ||||| || |||||||| |||||||||| || || Sbjct 332237 GACAATGTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTG 332178 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| || || || || | ||||| ||| ||| ||||||||||| ||| Sbjct 332177 ATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAG 332118 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||| || ||| | || |||||| Sbjct 332117 GAGTCGACTCTTCATCTCGTCCTGCGT 332091 >seq26 Length=969302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| |||||||| | || |||||| || |||| | | Sbjct 292092 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACTATC 292151 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||||||||| | ||||||||||| | Sbjct 292152 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTG 292211 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || || || || || || || | || |||||| ||| || |||||||||||| Sbjct 292212 ATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACCCTCTCCGATTATAACATCCAAAAG 292271 Query 38433 G 38433 | Sbjct 292272 G 292272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172356096640